YRC Public Data Repository - Protein Structure Prediction

Protein:	YAFX_ECOLI
Organism:	Escherichia coli
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAFX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|28316257 - gi\|28316257\|emb\|CAD66202.1\| hypothetical protein [Escherichia coli] gi\|75241919, gi\|... - gi\|75241919\|ref\|ZP_00725738.1\| hypothetical protein EcolF_01001284 [Escherichia coli F11], gi\|191171... gi\|110342131, gi... - gi\|110640539\|ref\|YP_668267.1\| anti-restriction protein [Escherichia coli 536], gi\|110342131\|gb\|ABG68...	263.0	[0..2]	[152..9]
gi\|75187723, gi\|... - gi\|75187723\|ref\|ZP_00700990.1\| hypothetical protein EcolE_01000960 [Escherichia coli E24377A], gi\|15...	263.0	[0..2]	[152..9]
gi\|26250391, gi\|... - gi\|26250391\|ref\|NP_756431.1\| hypothetical protein c4571 [Escherichia coli CFT073], gi\|26110821\|gb\|AA...	260.0	[0..2]	[152..9]
gi\|57434427 - gi\|57434427\|emb\|CAI43844.1\| hypothetical protein [Escherichia coli]	259.0	[0..2]	[152..9]
gi\|24528056 - gi\|24528056\|emb\|CAD33786.1\| Z1216 protein [Escherichia coli] gi\|110643997, gi... - gi\|110643997\|ref\|YP_671727.1\| putative antirestriction protein [Escherichia coli 536], gi\|110345589\|...	258.0	[0..2]	[152..9]
gi\|82779591, gi\|... - gi\|82779591\|ref\|YP_405940.1\| hypothetical protein SDY_4589 [Shigella dysenteriae Sd197], gi\|81243739...	256.0	[0..1]	[152..1]
gi\|91210171, gi\|... - gi\|91210171\|ref\|YP_540157.1\| hypothetical protein UTI89_C1143 [Escherichia coli UTI89], gi\|91071745\|...	255.0	[0..1]	[152..25]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQTQHDLA PANQPEFELT VTPVPDEQRI DFWPQYFGAI PQWLLLEPHI FAWMDRFCEG  60
   61 YSGGIWSFYT LSNGGAFMSP EPDNDETWRL FNCLNGNDAQ MSAEAAGIAV CLIAYSHHAC 120
  121 RTECDAMTAH YYRLREYAMQ HPEAHAILRI ID

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.443697
Match:	PF03230.4
Description:	No description for PF03230.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits