YRC Public Data Repository - Protein Structure Prediction

Protein:	YAFV_ECOLI
Organism:	Escherichia coli
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAFV_ECOLI.

Description	E-value	Query Range	Subject Range
NIT2 - nitrilase family, member 2	245.0	[0..1]	[256..1]
NIT2_XENTR - Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1	244.0	[0..1]	[256..1]
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	242.0	[0..2]	[256..430]
NIT2_RAT - Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1	241.0	[0..1]	[256..1]
gi\|109032725 - gi\|109032725\|ref\|XP_001091514.1\| PREDICTED: similar to nitrilase family, member 2 [Macaca mulatta]	240.0	[0..1]	[256..51]
gi\|126698064, gi... - gi\|126698064\|ref\|YP_001086961.1\| putative carbon-nitrogen hydrolase [Clostridium difficile 630], gi\|...	240.0	[0..1]	[256..1]
NIT2B_XENLA - Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1	240.0	[0..1]	[251..1]
NIT2_BOVIN - Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1	239.0	[0..1]	[256..1]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLKITLLQ QPLVWMDGPA NLRHFDRQLE GITGRDVIVL PEMFTSGFAM EAAASSLAQD  60
   61 DVVNWMTAKA QQCNALIAGS VALQTESGSV NRFLLVEPGG TVHFYDKRHL FRMADEHLHY 120
  121 KAGNARVIVE WRGWRILPLV CYDLRFPVWS RNLNDYDLAL YVANWPAPRS LHWQALLTAR 180
  181 AIENQAYVAG CNRVGSDGNG CHYRGDSRVI NPQGEIIATA DAHQATRIDA ELSMAALREY 240
  241 REKFPAWQDA DEFRLW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	2e11A
Description:	No description for 2e11A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits