YRC Public Data Repository - Protein Structure Prediction

Protein:	YAFU_ECOLI
Organism:	Escherichia coli
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAFU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|51590424, gi\|... - gi\|51597142\|ref\|YP_071333.1\| hypothetical protein YPTB2826 [Yersinia pseudotuberculosis IP 32953], g... gi\|186699261, gi... - gi\|186896235\|ref\|YP_001873347.1\| hypothetical protein YPTS_2933 [Yersinia pseudotuberculosis PB1/+],... gi\|170023556, gi... - gi\|170023556\|ref\|YP_001720061.1\| hypothetical protein YPK_1310 [Yersinia pseudotuberculosis YPIII], ... Q668B4\|Q668B4_YERPS - Putative membrane protein precursor - Yersinia pseudotuberculosis	128.0	[0..2]	[107..202]
gi\|218929923, gi... - gi\|218929923\|ref\|YP_002347798.1\| hypothetical protein YPO2863 [Yersinia pestis CO92], gi\|16123055\|re... gi\|149365323, gi... - gi\|149365323\|ref\|ZP_01887358.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291736\|... gi\|25510934 - pir\|\|AG0348 probable membrane protein YPO2863 [imported] - Yersinia pestis (strain CO92) gi\|89102432 - gi\|89102432\|ref\|ZP_01175066.1\| COG0651: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiport... gi\|77635270 - gi\|77635270\|ref\|ZP_00797356.1\| COG0651: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiport...	124.0	[0..2]	[107..110]
gi\|108775085, gi... - gi\|108811437\|ref\|YP_647204.1\| membrane protein [Yersinia pestis Nepal516], gi\|108775085\|gb\|ABG17604.... gi\|108808297, gi... - gi\|108808297\|ref\|YP_652213.1\| hypothetical protein YPA_2303 [Yersinia pestis Antiqua], gi\|108780210\|... gi\|145211181, gi... - gi\|145599485\|ref\|YP_001163561.1\| membrane protein [Yersinia pestis Pestoides F], gi\|145211181\|gb\|ABP...	123.0	[0..2]	[107..129]
gi\|45437366, gi\|... - gi\|45442501\|ref\|NP_994040.1\| hypothetical protein YP_2729 [Yersinia pestis biovar Microtus str. 9100...	123.0	[0..2]	[107..69]
gi\|229687951, gi... - gi\|229899006\|ref\|ZP_04514150.1\| hypothetical protein YPF_3453 [Yersinia pestis biovar Orientalis str... gi\|229838439, gi... - gi\|229838439\|ref\|ZP_04458598.1\| hypothetical protein YPH_0676 [Yersinia pestis biovar Orientalis str... gi\|21958141, gi\|... - gi\|22125269\|ref\|NP_668692.1\| hypothetical protein y1370 [Yersinia pestis KIM], gi\|21958141\|gb\|AAM849...	122.0	[0..2]	[107..136]
gi\|49613122, gi\|... - gi\|50122596\|ref\|YP_051763.1\| hypothetical protein ECA3675 [Pectobacterium atrosepticum SCRI1043], gi...	114.0	[0..1]	[87..181]
gi\|152961936, gi... - gi\|77629870\|ref\|ZP_00792456.1\| hypothetical protein YpseI_01001217 [Yersinia pseudotuberculosis IP 3...	110.0	[0..2]	[107..189]
gi\|36783839, gi\|... - gi\|37524415\|ref\|NP_927759.1\| hypothetical protein plu0406 [Photorhabdus luminescens subsp. laumondii...	106.0	[0..2]	[106..171]
gi\|46913131, gi\|... - gi\|54308702\|ref\|YP_129722.1\| hypothetical protein PBPRA1509 [Photobacterium profundum SS9], gi\|46913...	101.0	[0..1]	[105..129]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSERDLVNF LGDFSMDVAK AVIAGGVATA IGSLASFACV SFGFPVILVG GAILLTGIVC  60
   61 TVVLNEIDAQ CHLSEKLKYA IRDGLKRQQE LDKWKRENMT PFMYVLNTPP VI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits