YRC Public Data Repository - Protein Structure Prediction

Protein:	YAFM_ECOLI
Organism:	Escherichia coli
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAFM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|146397182, gi... - gi\|88937173\|ref\|ZP_01142754.1\| conserved hypothetical protein [Geobacter uraniumreducens Rf4], gi\|88...	146.0	[0..1]	[163..1]
gi\|91209315, gi\|... - gi\|91209315\|ref\|YP_539301.1\| hypothetical protein UTI89_C0267 [Escherichia coli UTI89], gi\|91070889\|... gi\|110640463, gi... - gi\|110640463\|ref\|YP_668191.1\| hypothetical protein ECP_0256 [Escherichia coli 536], gi\|110342055\|gb\|... gi\|226898964, gi... - gi\|237707754\|ref\|ZP_04538235.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|191171363, gi... - gi\|191171363\|ref\|ZP_03032912.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908297\|... gi\|218363953, gi... - gi\|218557184\|ref\|YP_002390097.1\| hypothetical protein ECS88_0263 [Escherichia coli S88], gi\|21836395... gi\|117622530, gi... - gi\|117622530\|ref\|YP_851443.1\| hypothetical protein APECO1_1741 [Escherichia coli APEC O1], gi\|115511...	143.0	[0..1]	[164..1]
gi\|67936826, gi\|... - gi\|67936826\|ref\|ZP_00529820.1\| Protein of unknown function DUF1568 [Chlorobium phaeobacteroides DSM ...	141.0	[0..1]	[165..1]
gi\|74310871, gi\|... - gi\|74310871\|ref\|YP_309290.1\| hypothetical protein SSON_0271 [Shigella sonnei Ss046], gi\|73854348\|gb\|...	140.0	[0..1]	[164..1]
gi\|59889757 - gi\|59889757\|emb\|CAH19112.1\| Putative transposase [Escherichia coli]	139.0	[0..1]	[164..1]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYRRYYIK GGTWFFTVNL RNRRSQLLTT QYQMLRHAII KVKRDRPFEI NAWVVLPEHM  60
   61 HCIWTLPEGD DDFSSRWREI KKQFTHACGL KNIWQPRFWE HAIRNTKDYR HHVDYIYINP 120
  121 VKHGWVKQVS DWPFSTFHRD VARGLYPIDW AGDVTDFSAG ERIIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	2ec2A
Description:	No description for 2ec2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits