YRC Public Data Repository - Protein Structure Prediction

Protein:	YAFL_ECOLI
Organism:	Escherichia coli
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAFL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13359711, gi\|... - gi\|15829508\|ref\|NP_308281.1\| putative lipoprotein [Escherichia coli O157:H7 str. Sakai], gi\|13359711... gi\|254590786, gi... - gi\|254791386\|ref\|YP_003076223.1\| predicted lipoprotein and C40 family peptidase [Escherichia coli O1... gi\|195938630 - gi\|195938630\|ref\|ZP_03084012.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4024] gi\|25497735, gi\|... - pir\|\|D85511 probable lipoprotein yafL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12512998, gi\|... - gi\|15799932\|ref\|NP_285944.1\| putative lipoprotein [Escherichia coli O157:H7 EDL933], gi\|12512998\|gb\|... gi\|13359711, gi\|... - gi\|15829508\|ref\|NP_308281.1\| putative lipoprotein [Escherichia coli O157:H7], gi\|13359711\|dbj\|BAB336...	259.0	[0..1]	[249..1]
gi\|82775618, gi\|... - gi\|82775618\|ref\|YP_401965.1\| putative lipoprotein [Shigella dysenteriae Sd197], gi\|81239766\|gb\|ABB60...	259.0	[0..1]	[249..1]
gi\|75258768 - gi\|75258768\|ref\|ZP_00730158.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|75211203 - gi\|75211203\|ref\|ZP_00711310.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|75189333 - gi\|75189333\|ref\|ZP_00702600.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein... gi\|209910698, gi... - gi\|209917439\|ref\|YP_002291523.1\| putative lipoprotein [Escherichia coli SE11], gi\|209910698\|dbj\|BAG7...	244.0	[0..1]	[249..1]
gi\|218430595, gi... - gi\|218703498\|ref\|YP_002411017.1\| putative exported hydrolase [Escherichia coli UMN026], gi\|218430595... gi\|59889756 - gi\|59889756\|emb\|CAH19111.1\| Putative lipoprotein [Escherichia coli]	243.0	[0..9]	[249..12]
gi\|74310869, gi\|... - gi\|74310869\|ref\|YP_309288.1\| putative lipoprotein [Shigella sonnei Ss046], gi\|73854346\|gb\|AAZ87053.1...	242.0	[0..1]	[249..1]
gi\|218363952, gi... - gi\|218557183\|ref\|YP_002390096.1\| putative exported hydrolase [Escherichia coli S88], gi\|218363952\|em... gi\|218425684, gi... - gi\|218688120\|ref\|YP_002396332.1\| putative exported hydrolase [Escherichia coli ED1a], gi\|218425684\|e... gi\|117622529, gi... - gi\|117622529\|ref\|YP_851442.1\| putative lipoprotein [Escherichia coli APEC O1], gi\|115511653\|gb\|ABI99...	241.0	[0..9]	[249..12]
gi\|110640462, gi... - gi\|110640462\|ref\|YP_668190.1\| putative lipoprotein [Escherichia coli 536], gi\|110342054\|gb\|ABG68291....	240.0	[0..9]	[249..12]
gi\|75237313 - gi\|75237313\|ref\|ZP_00721360.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	234.0	[0..20]	[249..2]
gi\|75231171 - gi\|75231171\|ref\|ZP_00717593.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	234.0	[0..20]	[249..2]
gi\|26246274, gi\|... - gi\|26246274\|ref\|NP_752313.1\| lipoprotein yafL precursor [Escherichia coli CFT073], gi\|26106672\|gb\|AA...	231.0	[0..21]	[249..2]

Back

Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPSIPSFV LSGLLLICLP FSSFASATTS HISFSYAARQ RMQNRARLLK QYQTHLKKQA  60
   61 SYIVEGNAES KRALRQHNRE QIKQHPEWFP APLKASDRRW QALAENNHFL SSDHLHNITE 120
  121 VAIHRLEQQL GKPYVWGGTR PDKGFDCSGL VFYAYNKILE AKLPRTANEM YHYRRATIVA 180
  181 NNDLRRGDLL FFHIHSREIA DHMGVYLGDG QFIESPRTGE TIRISRLAEP FWQDHFLGAR 240
  241 RILTEETIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2hbwA
Description:	No description for 2hbwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits