YRC Public Data Repository - Protein Structure Prediction

Protein:	ARFB_PSEPU
Organism:	Pseudomonas putida
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARFB_PSEPU.

Description	E-value	Query Range	Subject Range
RF1_SACD2 - Peptide chain release factor 1 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN...	166.0	[0..1]	[127..208]
gi\|11277793 - pir\|\|G81822 translation releasing factor RF-1 prfA NMA1945 [similarity] - Neisseria meningitidis (st... RF1_NEIMA - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN... RF1_NEIMA - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup A GN=prfA PE=3 SV=1	164.0	[0..1]	[127..206]
RF1_NEIMB - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup B GN=prfA PE=3 SV=1 gi\|11277796 - pir\|\|G81053 translation releasing factor RF-1 NMB1686 [similarity] - Neisseria meningitidis (strain ... RF1_NEIMB - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup B (strain MC58) GN=prfA PE=3 SV=1	163.0	[0..1]	[127..206]
gi\|115421397, gi... - gi\|187476811\|ref\|YP_784835.1\| peptide chain release factor 1 [Bordetella avium 197N], gi\|115421397\|e...	162.0	[0..1]	[127..202]
RF1_HAHCH - Peptide chain release factor 1 OS=Hahella chejuensis (strain KCTC 2396) GN=prfA PE=3 SV=1	162.0	[0..1]	[127..208]
RF1_CARHZ - Peptide chain release factor 1 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 ...	162.0	[0..1]	[127..205]
gi\|240118391 - gi\|240118391\|ref\|ZP_04732453.1\| peptide chain release factor 1 [Neisseria gonorrhoeae PID1] gi\|240017030 - gi\|240017030\|ref\|ZP_04723570.1\| peptide chain release factor 1 [Neisseria gonorrhoeae FA6140] RF1_NEIG1 - Peptide chain release factor 1 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=prfA PE=3 ...	162.0	[0..1]	[127..206]
RF1_CHRVO - Peptide chain release factor 1 OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 124... RF1_CHRVO - Peptide chain release factor 1 OS=Chromobacterium violaceum GN=prfA PE=3 SV=1	161.0	[0..1]	[127..206]
RF1_PSYCK - Peptide chain release factor 1 OS=Psychrobacter cryohalolentis (strain K5) GN=prfA PE=3 SV=1	161.0	[0..1]	[127..209]
RF1_CAMLR - Peptide chain release factor 1 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=prfA P...	161.0	[0..1]	[127..203]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTISNNVHL PDAEIELTYI RAQGAGGQNV NKVSSAVHLR FDIPASSLPE FYKERLLALR  60
   61 DSRITGDGVL IIKAQQYRTQ DQNRADALAR LAELIIAAGK TEKKRRPTKP TLGSKTRRLE 120
  121 GKARRSTVKA GRGKVDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2jvaA
Description:	No description for 2jvaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits