YRC Public Data Repository - Protein Structure Prediction

Protein:	YAEJ_ECOLI
Organism:	Escherichia coli
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAEJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|70728998, gi\|... - gi\|70728998\|ref\|YP_258732.1\| hypothetical protein PFL_1606 [Pseudomonas fluorescens Pf-5], gi\|683432...	167.0	[0..1]	[137..17]
gi\|77381724, gi\|... - gi\|77457721\|ref\|YP_347226.1\| hypothetical protein Pfl01_1494 [Pseudomonas fluorescens Pf0-1], gi\|773...	165.0	[0..1]	[137..1]
ARFB_PSEPU - Peptidyl-tRNA hydrolase ArfB OS=Pseudomonas putida GN=arfB PE=3 SV=1	165.0	[0..1]	[137..1]
gi\|49077264 - gi\|49077264\|gb\|AAT49658.1\| PA0868 [synthetic construct]	164.0	[0..1]	[138..1]
gi\|95110180 - gi\|95110180\|emb\|CAK14887.1\| putative protein chain release factor B [Pseudomonas entomophila L48] gi\|104781193, gi... - gi\|95110180\|emb\|CAK14887.1\| putative protein chain release factor B [Pseudomonas], gi\|104781193\|ref\|...	164.0	[0..1]	[137..1]
gi\|254239221, gi... - gi\|84316638\|ref\|ZP_00965110.1\| COG1186: Protein chain release factor B [Pseudomonas aeruginosa C3719... gi\|254245155, gi... - gi\|84322677\|ref\|ZP_00970761.1\| COG1186: Protein chain release factor B [Pseudomonas aeruginosa 2192]... gi\|107100326 - gi\|107100326\|ref\|ZP_01364244.1\| hypothetical protein PaerPA_01001351 [Pseudomonas aeruginosa PACS2] gi\|218773391, gi... - gi\|218893163\|ref\|YP_002442032.1\| peptidyl-tRNA hydrolase domain protein [Pseudomonas aeruginosa LESB... gi\|11347712 - pir\|\|A83538 conserved hypothetical protein PA0868 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116048792, gi... - gi\|32040881\|ref\|ZP_00138464.1\| COG1186: Protein chain release factor B [Pseudomonas aeruginosa UCBPP... gi\|15596065, gi\|... - gi\|9946766\|gb\|AAG04257.1\|AE004521_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi...	163.0	[0..1]	[137..1]
gi\|94418032, gi\|... - gi\|94418032\|ref\|ZP_01297848.1\| hypothetical protein PaerP_01000181 [Pseudomonas aeruginosa PA7], gi\|...	162.0	[0..1]	[137..1]
tr\|F3G728\|F3G728... - Uncharacterized protein OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_10893 PE=4 SV=1 gi\|63257515, gi\|... - gi\|66046808\|ref\|YP_236649.1\| hypothetical protein Psyr_3579 [Pseudomonas syringae pv. syringae B728a...	162.0	[0..1]	[137..1]
gi\|71554526, gi\|... - gi\|71733973\|ref\|YP_275683.1\| hypothetical protein PSPPH_3535 [Pseudomonas syringae pv. phaseolicola ...	162.0	[0..1]	[137..18]
gi\|28869023, gi\|... - gi\|28869023\|ref\|NP_791642.1\| hypothetical protein PSPTO_1818 [Pseudomonas syringae pv. tomato str. D... tr\|Q885L4\|Q885L4... - Peptidyl-tRNA hydrolase domain protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1...	161.0	[0..1]	[137..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVISRHVAI PDGELEITAI RAQGAGGQHV NKTSTAIHLR FDIRASSLPE YYKERLLAAS  60
   61 HHLISSDGVI VIKAQEYRSQ ELNREAALAR LVAMIKELTT EKKARRPTRP TRASKERRLA 120
  121 SKAQKSSVKA MRGKVRSGRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2jvaA
Description:	No description for 2jvaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits