YRC Public Data Repository - Protein Structure Prediction

Protein:	YADR_ECOLI
Organism:	Escherichia coli
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YADR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|111611416, gi... - gi\|111611416\|ref\|ZP_01398505.1\| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2], ...	162.0	[0..3]	[113..86]
gi\|217420420, gi... - gi\|217420420\|ref\|ZP_03451925.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|194569533, gi... - gi\|254299238\|ref\|ZP_04966688.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|226198375, gi... - gi\|226198375\|ref\|ZP_03793944.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|237504262, gi... - gi\|237813776\|ref\|YP_002898227.1\| putative conserved hypothetical protein [Burkholderia pseudomallei ... gi\|238561984, gi... - gi\|238561984\|ref\|ZP_00441063.2\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... ERPA_BURM9 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain NCTC 10229) GN=er... ERPA_BURMS - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain SAVP1) GN=erpA PE... ERPA_BURM7 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain NCTC 10247) GN=er... ERPA_BURP6 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 668) GN=erp... ERPA_BURP1 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 1710b) GN=e... ERPA_BURP0 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain 1106a) GN=e... ERPA_BURTA - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia thailandensis (strain E264 / ATC... gi\|254261342, gi... - gi\|254261342\|ref\|ZP_04952396.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|242138463, gi... - gi\|242315224\|ref\|ZP_04814240.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURPS - Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei GN=erpA PE=3 SV=1 ERPA_BURMA - Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei GN=erpA PE=3 SV=1 gi\|194505330, gi... - gi\|254180678\|ref\|ZP_04887276.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|160694807, gi... - gi\|254178893\|ref\|ZP_04885547.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|254194830, gi... - gi\|254194830\|ref\|ZP_04901260.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|194507224, gi... - gi\|254191505\|ref\|ZP_04898008.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|254355909, gi... - gi\|254355909\|ref\|ZP_04972187.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|167904243 - gi\|167904243\|ref\|ZP_02491448.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURPS - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia pseudomallei (strain K96243) GN=... gi\|194522849, gi... - gi\|254202612\|ref\|ZP_04908975.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei ... gi\|167895853 - gi\|167895853\|ref\|ZP_02483255.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... ERPA_BURMA - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia mallei (strain ATCC 23344) GN=er... gi\|134280487, gi... - gi\|134280487\|ref\|ZP_01767198.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167920455 - gi\|167920455\|ref\|ZP_02507546.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167912504 - gi\|167912504\|ref\|ZP_02499595.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167817376 - gi\|167817376\|ref\|ZP_02449056.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167740162 - gi\|167740162\|ref\|ZP_02412936.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167847266 - gi\|167847266\|ref\|ZP_02472774.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167825783 - gi\|167825783\|ref\|ZP_02457254.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167580601 - gi\|167580601\|ref\|ZP_02373475.1\| iron-sulfur cluster assembly accessory protein [Burkholderia thailan... gi\|243063547, gi... - gi\|243063547\|gb\|EES45733.1\| iron-sulfur cluster assembly accessory protein [Burkholderia mallei PRL-... gi\|167721188 - gi\|167721188\|ref\|ZP_02404424.1\| iron-sulfur cluster assembly accessory protein [Burkholderia pseudom... gi\|167618709 - gi\|167618709\|ref\|ZP_02387340.1\| iron-sulfur cluster assembly accessory protein [Burkholderia thailan...	158.0	[0..2]	[114..10]
gi\|29140745, gi\|... - gi\|29140745\|ref\|NP_804087.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subsp. ... gi\|16759195 - gi\|16759195\|ref\|NP_454812.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subsp. ... gi\|197092888, gi... - gi\|197361412\|ref\|YP_002141048.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica sub... gi\|16501485, gi\|... - gi\|25310150\|pir\|\|AF0527 conserved hypothetical protein STY0226 [imported] - Salmonella enterica subs... gi\|16418708 - gi\|16418708\|gb\|AAL19168.1\| putative HesB-like domain protein [Salmonella enterica subsp. enterica se... gi\|62178774, gi\|... - gi\|62178774\|ref\|YP_215191.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subsp. ... gi\|56126734, gi\|... - gi\|56412477\|ref\|YP_149552.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subsp. ...	158.0	[0..1]	[114..16]
ERPA1_BURVG - Putative iron-sulfur cluster insertion protein ErpA 1 OS=Burkholderia vietnamiensis (strain G4 / LMG...	158.0	[0..2]	[114..11]
ERPA_METFK - Putative iron-sulfur cluster insertion protein ErpA OS=Methylobacillus flagellatus (strain KT / ATCC...	157.0	[0..2]	[113..5]
gi\|170135481, gi... - gi\|170699599\|ref\|ZP_02890638.1\| iron-sulfur cluster assembly accessory protein [Burkholderia ambifar... ERPA_BURCM - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia ambifaria (strain ATCC BAA-244 /... ERPA_BURA4 - Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia ambifaria (strain MC40-6) GN=erp...	157.0	[0..2]	[114..11]
ERPA_SALCH - Iron-sulfur cluster insertion protein erpA OS=Salmonella choleraesuis GN=erpA PE=3 SV=2 ERPA_SALTY - Iron-sulfur cluster insertion protein erpA OS=Salmonella typhimurium GN=erpA PE=3 SV=2 ERPA_SALTI - Iron-sulfur cluster insertion protein erpA OS=Salmonella typhi GN=erpA PE=3 SV=2 ERPA_SALPA - Iron-sulfur cluster insertion protein erpA OS=Salmonella paratyphi A GN=erpA PE=3 SV=2 ERPA_SALTI - Iron-sulfur cluster insertion protein ErpA OS=Salmonella typhi GN=erpA PE=3 SV=2 ERPA_SALCH - Iron-sulfur cluster insertion protein erpA OS=Salmonella choleraesuis GN=erpA PE=3 SV=2 ERPA_SALTY - Iron-sulfur cluster insertion protein erpA OS=Salmonella typhimurium GN=erpA PE=3 SV=2 ERPA_SALTY - Iron-sulfur cluster insertion protein ErpA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... gi\|197291921, gi... - gi\|197291921\|gb\|EDY31271.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella enterica... gi\|205335039, gi... - gi\|205335039\|gb\|EDZ21803.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella enterica... gi\|205331333, gi... - gi\|205331333\|gb\|EDZ18097.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella enterica... gi\|205324384, gi... - gi\|205324384\|gb\|EDZ12223.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella enterica... ERPA_SALPB - Iron--sulfur cluster insertion protein erpA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) ... ERPA_SALAR - Iron-sulfur cluster insertion protein ErpA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 /... gi\|213051743 - gi\|213051743\|ref\|ZP_03344621.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subs... gi\|213027304 - gi\|213027304\|ref\|ZP_03341751.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subs... ERPA_SALEP - Iron-sulfur cluster insertion protein ErpA OS=Salmonella enteritidis PT4 (strain P125109) GN=erpA PE... ERPA_SALG2 - Iron-sulfur cluster insertion protein ErpA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=... gi\|204926749, gi... - gi\|204926749\|ref\|ZP_03217951.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella ente... gi\|200389283, gi... - gi\|200389283\|ref\|ZP_03215895.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella ente... ERPA_SALDC - Iron-sulfur cluster insertion protein ErpA OS=Salmonella dublin (strain CT_02021853) GN=erpA PE=3 SV... gi\|197265134, gi... - gi\|197265134\|ref\|ZP_03165208.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella ente... ERPA_SALA4 - Iron-sulfur cluster insertion protein ErpA OS=Salmonella agona (strain SL483) GN=erpA PE=3 SV=1 ERPA_SALSV - Iron-sulfur cluster insertion protein ErpA OS=Salmonella schwarzengrund (strain CVM19633) GN=erpA PE... gi\|194472760, gi... - gi\|194472760\|ref\|ZP_03078744.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella ente... ERPA_SALHS - Iron-sulfur cluster insertion protein ErpA OS=Salmonella heidelberg (strain SL476) GN=erpA PE=3 SV=1 ERPA_SALNS - Iron-sulfur cluster insertion protein ErpA OS=Salmonella newport (strain SL254) GN=erpA PE=3 SV=1 ERPA_SALPB - Iron-sulfur cluster insertion protein ErpA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... gi\|195632907, gi... - gi\|195632907\|gb\|EDX51361.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella enterica... gi\|168263931, gi... - gi\|205347416\|gb\|EDZ34047.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella enterica... gi\|168245067, gi... - gi\|205336164\|gb\|EDZ22928.1\| iron-sulfur cluster assembly accessory protein YadR [Salmonella enterica... lcl\|NC_016856.1_... - [gene=yadR] [protein=iron-sulfur cluster insertion protein ErpA] [protein_id=YP_005235875.1] [locati... gi\|238911270 - gi\|238911270\|ref\|ZP_04655107.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subs... gi\|213854734 - gi\|213854734\|ref\|ZP_03382974.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subs... gi\|213647540 - gi\|213647540\|ref\|ZP_03377593.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subs... gi\|213583697 - gi\|213583697\|ref\|ZP_03365523.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subs... ERPA_SALPA - Iron-sulfur cluster insertion protein ErpA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=... gi\|213425930 - gi\|213425930\|ref\|ZP_03358680.1\| iron-sulfur cluster insertion protein ErpA [Salmonella enterica subs... ERPA_SALCH - Iron-sulfur cluster insertion protein ErpA OS=Salmonella choleraesuis (strain SC-B67) GN=erpA PE=3 S...	157.0	[0..1]	[114..1]
gi\|91209227, gi\|... - gi\|91209227\|ref\|YP_539213.1\| iron-sulfur cluster insertion protein ErpA [Escherichia coli UTI89], gi... gi\|26246102, gi\|... - gi\|26246102\|ref\|NP_752141.1\| iron-sulfur cluster insertion protein ErpA [Escherichia coli CFT073], g...	157.0	[0..1]	[114..12]
gi\|238785045, gi... - gi\|77957524\|ref\|ZP_00821577.1\| COG0316: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	157.0	[0..1]	[114..1]
gi\|221729268, gi... - gi\|222109824\|ref\|YP_002552088.1\| iron-sulfur cluster assembly accessory protein [Diaphorobacter sp. ... ERPA_ACISJ - Putative iron-sulfur cluster insertion protein ErpA OS=Acidovorax sp. (strain JS42) GN=erpA PE=3 SV=...	157.0	[0..2]	[114..9]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDVALPLE FTDAAANKVK SLIADEDNPN LKLRVYITGG GCSGFQYGFT FDDQVNEGDM  60
   61 TIEKQGVGLV VDPMSLQYLV GGSVDYTEGL EGSRFIVTNP NAKSTCGCGS SFSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2apnA
Description:	No description for 2apnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits