YRC Public Data Repository - Protein Structure Prediction

Protein:	YAAW_ECOLI
Organism:	Escherichia coli
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAAW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|41759 - gi\|41759\|emb\|CAA47934.1\| unnamed protein product [Escherichia coli]	306.0	[0..1]	[237..1]
gi\|23467301, gi\|... - gi\|23467301\|ref\|ZP_00122884.1\| COG4735: Uncharacterized protein conserved in bacteria [Haemophilus s...	300.0	[0..3]	[232..1]
gi\|7465057 - gi\|7465057\|pir\|\|B71800 hypothetical protein jhp1494 - Helicobacter pylori (strain J99) YF88_HELPJ - UPF0174 protein jhp_1494 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_1494 PE=3 SV=1	295.0	[0..3]	[236..1]
gi\|107836198, gi... - gi\|108562425\|ref\|YP_626741.1\| hypothetical protein HPAG1_1536 [Helicobacter pylori HPAG1], gi\|107836...	295.0	[0..3]	[236..1]
Y1588_HELPY - UPF0174 protein HP_1588 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_1588 PE=3 SV=1 YF88_HELPY, Y158... - (O26107) Hypothetical UPF0174 protein HP1588, UPF0174 protein HP_1588 OS=Helicobacter pylori GN=HP_1...	294.0	[0..3]	[235..1]
gi\|254228164, gi... - gi\|75857021\|ref\|ZP_00764641.1\| COG4735: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	289.0	[0..3]	[231..1]
gi\|74310625, gi\|... - gi\|74310625\|ref\|YP_309044.1\| hypothetical protein SSON_0012 [Shigella sonnei Ss046], gi\|73854102\|gb\|...	281.0	[0..1]	[237..1]
gi\|26245933, gi\|... - gi\|26245933\|ref\|NP_751972.1\| hypothetical protein c0016 [Escherichia coli CFT073], gi\|26106330\|gb\|AA... gi\|227885094, gi... - gi\|227885094\|ref\|ZP_04002899.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783792...	280.0	[0..1]	[237..1]
gi\|75175987, gi\|... - gi\|75175987\|ref\|ZP_00696166.1\| COG4735: Uncharacterized protein conserved in bacteria [Shigella boyd...	280.0	[0..1]	[237..1]
gi\|82775393, gi\|... - gi\|82775393\|ref\|YP_401739.1\| hypothetical protein SDY_0011 [Shigella dysenteriae Sd197], gi\|81239541...	280.0	[0..1]	[237..1]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVNYLNDSD LDFLQHCSEE QLANFARLLT HNEKGKTRLS SVLMRNELFK SMEGHPEQHR  60
   61 RNWQLIAGEL QHFGGDSIAN KLRGHGKLYR AILLDVSKRL KLKADKEMST FEIEQQLLEQ 120
  121 FLRNTWKKMD EEHKQEFLHA VDARVNELEE LLPLLMKDKL LAKGVSHLLS SQLTRILRTH 180
  181 AAMSVLGHGL LRGAGLGGPV GAALNGVKAV SGSAYRVTIP AVLQIACLRR MVSATQV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	146.173925
Match:	PF03667.4
Description:	No description for PF03667.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits