YRC Public Data Repository - Protein Structure Prediction

Protein:	YAAA_ECOLI
Organism:	Escherichia coli
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|116183442, gi... - gi\|75853930\|ref\|ZP_00761667.1\| COG3022: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	413.0	[0..1]	[257..1]
gi\|91188922, gi\|... - gi\|91226791\|ref\|ZP_01261444.1\| hypothetical protein V12G01_13479 [Vibrio alginolyticus 12G01], gi\|91...	413.0	[0..1]	[258..1]
gi\|37197584, gi\|... - gi\|37678843\|ref\|NP_933452.1\| hypothetical protein VV0659 [Vibrio vulnificus YJ016], gi\|37197584\|dbj\|...	412.0	[0..1]	[257..27]
gi\|89051631, gi\|... - gi\|89072527\|ref\|ZP_01159099.1\| hypothetical protein SKA34_18419 [Photobacterium sp. SKA34], gi\|89051...	411.0	[0..1]	[257..1]
gi\|90438246, gi\|... - gi\|90580588\|ref\|ZP_01236393.1\| hypothetical protein VAS14_07659 [Vibrio angustum S14], gi\|90438246\|g...	410.0	[0..1]	[257..1]
Y535_VIBVU - UPF0246 protein VV1_0535 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_0535 PE=3 SV=1 Y535_VIBVU - UPF0246 protein VV1_0535 OS=Vibrio vulnificus GN=VV1_0535 PE=3 SV=1	410.0	[0..1]	[257..1]
Y504_VIBPA - UPF0246 protein VP0504 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0504 PE=... Y504_VIBPA - UPF0246 protein VP0504 OS=Vibrio parahaemolyticus GN=VP0504 PE=3 SV=1	409.0	[0..1]	[257..1]
gi\|121591290, gi... - gi\|121591290\|ref\|ZP_01678584.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215468... gi\|153819770, gi... - gi\|153819770\|ref\|ZP_01972437.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... Y2278_VIBCM - UPF0246 protein VCM66_2278 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=VCM66_2278 PE=3 SV=1 gi\|229355084, gi... - gi\|229507579\|ref\|ZP_04397084.1\| hypothetical protein VCF_002808 [Vibrio cholerae BX 330286], gi\|2293... gi\|229352190, gi... - gi\|229512225\|ref\|ZP_04401704.1\| hypothetical protein VCE_003637 [Vibrio cholerae B33], gi\|229352190\|... Y3134_VIBC3 - UPF0246 protein VC0395_A1934/VC395_2470 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classica... gi\|229519361, gi... - gi\|229519361\|ref\|ZP_04408804.1\| hypothetical protein VCC_003391 [Vibrio cholerae RC9], gi\|229344050\|... Y2355_VIBCH - UPF0246 protein VC_2355 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|229524347, gi... - gi\|229524347\|ref\|ZP_04413752.1\| hypothetical protein VCA_001937 [Vibrio cholerae bv. albensis VL426]... gi\|229607085, gi... - gi\|229607085\|ref\|YP_002877733.1\| hypothetical protein VCD_001994 [Vibrio cholerae MJ-1236], gi\|22936... gi\|121627925, gi... - gi\|75813993\|ref\|ZP_00744659.1\| COG3022: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|254845182, gi... - gi\|254849477\|ref\|ZP_05238827.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254845182\|... gi\|150423895, gi... - gi\|254285985\|ref\|ZP_04960946.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197752... Y2355_VIBCH, YN5... - (Q9KPL2) Hypothetical UPF0246 protein VC2355, UPF0246 protein VC_2355 OS=Vibrio cholerae GN=VC_2355 ...	409.0	[0..1]	[257..1]
gi\|85834825, gi\|... - gi\|86147397\|ref\|ZP_01065710.1\| hypothetical protein MED222_01042 [Vibrio sp. MED222], gi\|85834825\|gb...	406.0	[0..1]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILISPAKT LDYQSPLTTT RYTLPELLDN SQQLIHEARK LTPPQISTLM RISDKLAGIN  60
   61 AARFHDWQPD FTPANARQAI LAFKGDVYTG LQAETFSEDD FDFAQQHLRM LSGLYGVLRP 120
  121 LDLMQPYRLE MGIRLENARG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [141-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDLYQFWGDI ITNKLNEALA AQGDNVVINL ASDEYFKSVK PKKLNAEIIK PVFLDEKNGK  60
   61 FKIISFYAKK ARGLMSRFII ENRLTKPEQL TGFNSEGYFF DEDSSSNGEL VFKRYEQR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits