YRC Public Data Repository - Protein Structure Prediction

Protein:	YA60_PYRHO, Y106...
Organism:	Pyrococcus horikoshii
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YA60_PYRHO, Y106....

Description	E-value	Query Range	Subject Range
gi\|83754805, gi\|... - gi\|83754805\|pdb\|2CRU\|A Chain A, Solution Structure Of Programmed Cell Death 5, gi\|159163907\|pdb\|2CRU...	113.0	[0..11]	[115..8]
gi\|61370000, gi\|... - gi\|61370000\|gb\|AAX43425.1\| programmed cell death 5 [synthetic construct], gi\|61368717\|gb\|AAX43226.1\|...	113.0	[0..3]	[115..1]
PDCD5_MOUSE - Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3	113.0	[0..3]	[115..1]
gi\|27731143, gi\|... - gi\|27731143\|ref\|XP_214911.1\| PREDICTED: similar to Programmed cell death protein 5 (TFAR19 protein) ...	112.0	[0..3]	[115..1]
gi\|54311185, gi\|... - gi\|54311185\|gb\|AAH84757.1\| LOC495300 protein [Xenopus laevis], gi\|148237996\|ref\|NP_001088436.1\| hypo...	112.0	[0..3]	[115..1]
gi\|41055911, gi\|... - gi\|94734340\|emb\|CAK04543.1\| programmed cell death 5 [Danio rerio], gi\|47940352\|gb\|AAH71345.1\| Progra...	112.0	[0..3]	[115..1]
gi\|62859829 - gi\|62859829\|ref\|NP_001017011.1\| programmed cell death 5 [Xenopus (Silurana) tropicalis]	111.0	[0..3]	[115..1]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREMAEDIEE IRRRKLMELQ RKYLEQQKAQ EEAERQQALI EAQIQAILRK ILTPEARERL  60
   61 ARVKLVRPEL ARQVELILVQ LYQAGQITER IDDAKLKRIL AQIEAKTRRE FRIKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.09691
Match:	2cruA
Description:	Solution structure of programmed cell death 5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits