YRC Public Data Repository - Protein Structure Prediction

Protein:	Y875_PYRAB
Organism:	Pyrococcus abyssi
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y875_PYRAB.

Description	E-value	Query Range	Subject Range
gi\|68519008, gi\|... - gi\|68543296\|ref\|ZP_00583006.1\| Protein of unknown function DUF589 [Shewanella baltica OS155], gi\|685...	167.0	[0..1]	[141..1]
gi\|114047853, gi... - gi\|78691752\|ref\|ZP_00856349.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78508835\|gb\|... gi\|82405263, gi\|... - gi\|82496688\|ref\|ZP_00882253.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82405263\|gb\|...	166.0	[0..1]	[141..1]
gi\|84390517, gi\|... - gi\|84501226\|ref\|ZP_00999431.1\| hypothetical protein OB2597_12713 [Oceanicola batsensis HTCC2597], gi...	166.0	[0..1]	[141..1]
gi\|78505853, gi\|... - gi\|78686384\|ref\|ZP_00851152.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78505853\|gb...	166.0	[0..1]	[141..1]
gi\|217498049, gi... - gi\|217972914\|ref\|YP_002357665.1\| protein of unknown function DUF55 [Shewanella baltica OS223], gi\|21... gi\|153001165, gi... - gi\|153001165\|ref\|YP_001366846.1\| hypothetical protein Shew185_2648 [Shewanella baltica OS185], gi\|15... gi\|113949524, gi... - gi\|160875835\|ref\|YP_001555151.1\| hypothetical protein Sbal195_2723 [Shewanella baltica OS195], gi\|16...	166.0	[0..1]	[141..1]
gi\|67547057, gi\|... - gi\|67547057\|ref\|ZP_00424964.1\| Protein of unknown function DUF589 [Burkholderia vietnamiensis G4], g...	166.0	[0..1]	[142..69]
gi\|83643671, gi\|... - gi\|83643671\|ref\|YP_432106.1\| hypothetical protein HCH_00785 [Hahella chejuensis KCTC 2396], gi\|83631...	164.0	[0..1]	[141..1]
gi\|124547195, gi... - gi\|124547195\|ref\|ZP_01706148.1\| protein of unknown function DUF55 [Shewanella putrefaciens 200], gi\|... gi\|120559245, gi... - gi\|82740804\|ref\|ZP_00903538.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82721790\|...	164.0	[0..1]	[141..1]
SO1969 - conserved hypothetical protein gi\|24347845, gi\|... - gi\|24373533\|ref\|NP_717576.1\| hypothetical protein SO_1969 [Shewanella oneidensis MR-1], gi\|24347845\|...	164.0	[0..1]	[141..1]
gi\|68177008, gi\|... - gi\|95928813\|ref\|ZP_01311559.1\| protein of unknown function DUF589 [Desulfuromonas acetoxidans DSM 68...	163.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYWLCITNR DNWKVVKEKN VWGVPRRHEN TMKRVKPGDK LVFYVKQESR KGEVLEPMIV  60
   61 GIFEVVSEPY SDSTKIFKSH TPGETYPIRV KIRPIKIGEV KFKPLIPKLS FIKNKKKWSG 120
  121 HLMGKAMREI PEEDYKLIES LL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1wmmA
Description:	Crystal structure of PH1033 from Pyrococcus horikoshii Ot3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits