YRC Public Data Repository - Protein Structure Prediction

Protein:	Y866_METJA
Organism:	Methanocaldococcus jannaschii
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y866_METJA.

Description	E-value	Query Range	Subject Range
gi\|2127972 - gi\|2127972\|pir\|\|B64408 histidine triad (HIT) protein MJ0866 - Methanococcus jannaschii	161.0	[0..1]	[129..1]
gi\|19914624, gi\|... - gi\|20089695\|ref\|NP_615770.1\| histidine triad protein [Methanosarcina acetivorans C2A], gi\|19914624\|g...	156.0	[0..2]	[128..16]
gi\|21228060, gi\|... - gi\|21228060\|ref\|NP_633982.1\| Hit-like protein [Methanosarcina mazei Go1], gi\|20906495\|gb\|AAM31654.1\|...	155.0	[0..2]	[128..9]
gi\|221088498, gi... - gi\|221088498\|ref\|ZP_03558028.1\| histidine triad (HIT) protein [Geobacillus sp. Y412MC61], gi\|2207076... gi\|56379034, gi\|... - gi\|56419192\|ref\|YP_146510.1\| Hit-like protein (cell-cycle regulation histidine triad) [Geobacillus k... gi\|229330001, gi... - gi\|229499034\|ref\|ZP_04392724.1\| histidine triad (HIT) protein [Geobacillus sp. Y412MC52], gi\|2293300...	147.0	[0..2]	[128..7]
gi\|62462599, gi\|... - gi\|62462599\|ref\|ZP_00381990.1\| COG0537: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT fa...	146.0	[0..2]	[127..4]
gi\|73669247, gi\|... - gi\|73669247\|ref\|YP_305262.1\| histidine triad protein [Methanosarcina barkeri str. Fusaro], gi\|723964...	144.0	[0..2]	[128..5]
gi\|89084840, gi\|... - gi\|89100411\|ref\|ZP_01173274.1\| Hit family hydrolase [Bacillus sp. NRRL B-14911], gi\|89084840\|gb\|EAR6...	143.0	[0..2]	[125..4]
gi\|80976484, gi\|... - gi\|81176740\|ref\|ZP_00875742.1\| Histidine triad (HIT) protein [Streptococcus suis 89/1591], gi\|809764...	142.0	[0..2]	[125..4]
gi\|228639713, gi... - gi\|229143760\|ref\|ZP_04272181.1\| Histidine triad (HIT) protein [Bacillus cereus BDRD-ST24], gi\|228639... gi\|228657038, gi... - gi\|229126458\|ref\|ZP_04255473.1\| Histidine triad (HIT) protein [Bacillus cereus BDRD-Cer4], gi\|228657... gi\|228674869, gi... - gi\|229108614\|ref\|ZP_04238226.1\| Histidine triad (HIT) protein [Bacillus cereus Rock1-15], gi\|2286748... gi\|30019204, gi\|... - gi\|30019204\|ref\|NP_830835.1\| bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) [Bacillus cereus ATCC...	142.0	[0..2]	[125..8]
gi\|42736145, gi\|... - gi\|42780226\|ref\|NP_977473.1\| HIT family protein [Bacillus cereus ATCC 10987], gi\|42736145\|gb\|AAS4008...	142.0	[0..2]	[125..29]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIFCKIING EIPAKVVYED EHVLAFLDIN PRNKGHTLVV PKKHYERFDE MPDDELCNFI  60
   61 KGVKKTVEVL KKLGFDGYNI VNNNGRVAGQ EVNHVHFHII PRYEGDGEVV KFGEVKNVDL 120
  121 DEVLKEIKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	1y23A
Description:	Crystal structure of a member of HIT family of proteins from bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits