YRC Public Data Repository - Protein Structure Prediction

Protein:	Y854_PYRHO
Organism:	Pyrococcus horikoshii
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y854_PYRHO.

Description	E-value	Query Range	Subject Range
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	197.0	[0..1]	[126..12]
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	194.0	[0..1]	[126..1]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	187.0	[0..2]	[126..3]
gi\|167037280, gi... - gi\|76795304\|ref\|ZP_00777677.1\| YjgF-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|241883716, gi... - gi\|241903918\|ref\|ZP_04788633.1\| endoribonuclease L-PSP [Thermoanaerobacter brockii subsp. finnii Ako...	181.0	[0..1]	[125..1]
gi\|167040525, gi... - gi\|167040525\|ref\|YP_001663510.1\| putative endoribonuclease L-PSP [Thermoanaerobacter sp. X514], gi\|1... gi\|242257729, gi... - gi\|242257729\|ref\|ZP_04802583.1\| endoribonuclease L-PSP [Thermoanaerobacter sp. X513], gi\|242230767\|g...	180.0	[0..1]	[125..1]
gi\|37197949, gi\|... - gi\|37679206\|ref\|NP_933815.1\| putative translation initiation inhibitor [Vibrio vulnificus YJ016], gi... gi\|27363650, gi\|... - gi\|27363650\|ref\|NP_759178.1\| putative translation initiation inhibitor [Vibrio vulnificus CMCP6], gi...	179.0	[0..1]	[126..1]
gi\|77996096, gi\|... - gi\|78043981\|ref\|YP_361254.1\| endoribonuclease L-PSP family protein [Carboxydothermus hydrogenoforman...	179.0	[0..1]	[125..1]
gi\|58177560, gi\|... - gi\|58177562\|pdb\|1XRG\|C Chain C, Conserved Hypothetical Protein From Clostridium Thermocellum Cth-296...	178.0	[0..3]	[125..34]
gi\|134052882, gi... - gi\|88945249\|ref\|ZP_01148463.1\| YjgF-like protein [Desulfotomaculum reducens MI-1], gi\|88925122\|gb\|EA...	177.0	[0..2]	[124..4]
gi\|145952961, gi... - gi\|90573901\|ref\|ZP_01230409.1\| hypothetical protein CdifQ_02002769 [Clostridium difficile QCD-32g58]... gi\|255651025 - gi\|255651025\|ref\|ZP_05397927.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|115251566, gi... - gi\|126700129\|ref\|YP_001089026.1\| putative translation inhibitor endoribonuclease [Clostridium diffic... gi\|255656496 - gi\|255656496\|ref\|ZP_05401905.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255101674 - gi\|255101674\|ref\|ZP_05330651.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255307543 - gi\|255307543\|ref\|ZP_05351714.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255315240 - gi\|255315240\|ref\|ZP_05356823.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255517909 - gi\|255517909\|ref\|ZP_05385585.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|254976108 - gi\|254976108\|ref\|ZP_05272580.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255093498 - gi\|255093498\|ref\|ZP_05322976.1\| putative translation inhibitor endoribonuclease [Clostridium diffici...	177.0	[0..2]	[124..3]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEVIFTENA PKPIGPYSQA IKAGNFLFIA GQIPIDPKTG EIVKGDIKDQ TRQVLENIKA  60
   61 ILEAAGYSLN DVIKVTVYLK DMNDFAKMNE VYAEYFGESK PARVAVEVSR LPKDVLIEIE 120
  121 AIAYKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.154902
Match:	2dyyA
Description:	No description for 2dyyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits