YRC Public Data Repository - Protein Structure Prediction

Protein:	Y675_RALSO
Organism:	Ralstonia solanacearum
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y675_RALSO.

Description	E-value	Query Range	Subject Range
gi\|113868871, gi... - gi\|113868871\|ref\|YP_727360.1\| hypothetical protein H16_A2916 [Ralstonia eutropha H16], gi\|113527647\|...	286.0	[0..1]	[190..4]
gi\|73540411, gi\|... - gi\|73540411\|ref\|YP_294931.1\| hypothetical protein Reut_A0705 [Ralstonia eutropha JMP134], gi\|7211782...	286.0	[0..1]	[190..4]
gi\|68554123, gi\|... - gi\|94311675\|ref\|YP_584885.1\| hypothetical protein Rmet_2743 [Ralstonia metallidurans CH34], gi\|93355...	284.0	[0..1]	[190..4]
gi\|207744139, gi... - gi\|207744139\|ref\|YP_002260531.1\| cog1678, transcriptional regulator protein [Ralstonia solanacearum ... gi\|206591371, gi... - gi\|207728126\|ref\|YP_002256520.1\| cog1678, putative transcriptional regulator protein [Ralstonia sola... gi\|83727195, gi\|... - gi\|83746229\|ref\|ZP_00943283.1\| Transcriptional regulator, algH [Ralstonia solanacearum UW551], gi\|83...	284.0	[0..1]	[190..1]
gi\|76811582, gi\|... - gi\|76811582\|ref\|YP_334542.1\| hypothetical protein BURPS1710b_3170 [Burkholderia pseudomallei 1710b],...	280.0	[0..1]	[190..82]
gi\|91782033, gi\|... - gi\|91782033\|ref\|YP_557239.1\| hypothetical protein Bxe_A3811 [Burkholderia xenovorans LB400], gi\|9168...	277.0	[0..1]	[190..30]
Y798_BURVG - UPF0301 protein Bcep1808_0798 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_0798...	277.0	[0..1]	[190..1]
gi\|83719645, gi\|... - gi\|83719645\|ref\|YP_442008.1\| hypothetical protein BTH_I1462 [Burkholderia thailandensis E264], gi\|83...	276.0	[0..1]	[190..16]
gi\|84360997 - gi\|84360997\|ref\|ZP_00985682.1\| COG1678: Putative transcriptional regulator [Burkholderia dolosa AUO1...	276.0	[0..1]	[190..1]
Y835_BURCC - UPF0301 protein Bcenmc03_0835 OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_0835 PE=3 SV=1 Y382_BURCA - UPF0301 protein Bcen_0382 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_0382 PE=3 SV=1 Y864_BURCH - UPF0301 protein Bcen2424_0864 OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_0864 PE=3 SV=1 gi\|84357077 - gi\|84357077\|ref\|ZP_00981907.1\| COG1678: Putative transcriptional regulator [Burkholderia cenocepacia...	276.0	[0..1]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPDAPINL TNQFLIAMPG MADPTFSGTV VYLCEHNERG ALGLVINRPI DIDLATLFDK  60
   61 IDLKLEIHPL AEQPVYYGGP VQTERGFVLH DAMGSYSSSL TVPGGLEMTT SKDVLEAVAR 120
  121 GGGPQRFILT LGYAGWSAGQ LEEEIGRNGW LTVQADPEII FNVPAEERFA AALRLLGINP 180
  181 AMLSGEAGHA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	2aj2A
Description:	X-Ray structure of hypothetical protein VC0467 from Vibrio cholerae: new fold. Northeast Structural Genomics Consortium target VcR8.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits