YRC Public Data Repository - Protein Structure Prediction

Protein:	Y305_CHLMU
Organism:	Chlamydia muridarum
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y305_CHLMU.

Description	E-value	Query Range	Subject Range
gi\|231273703, gi... - gi\|237802469\|ref\|YP_002887663.1\| putative protein ligase [Chlamydia trachomatis], gi\|231273703\|emb\|C... Y035_CHLTR - Uncharacterized protein CT_035 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_035 PE=3 SV=1 Y035_CHLTR - Uncharacterized protein CT_035 OS=Chlamydia trachomatis GN=CT_035 PE=3 SV=1 gi\|76167277, gi\|... - gi\|76788747\|ref\|YP_327833.1\| biotin--protein ligase [Chlamydia trachomatis A/HAR-13], gi\|76167277\|gb...	363.0	[0..3]	[259..1]
gi\|29834755, gi\|... - gi\|29840406\|ref\|NP_829512.1\| biotin apo-protein ligase-related protein [Chlamydophila caviae GPIC], ...	320.0	[0..3]	[250..2]
gi\|42549274, gi\|... - gi\|46127903\|ref\|XP_388505.1\| hypothetical protein FG08329.1 [Gibberella zeae PH-1], gi\|42549274\|gb\|E...	316.0	[0..3]	[253..5]
gi\|28921970, gi\|... - gi\|32409781\|ref\|XP_325371.1\| hypothetical protein [Neurospora crassa], gi\|28921970\|gb\|EAA31242.1\| pr... gi\|85097606 - gi\|85097606\|ref\|XP_960478.1\| hypothetical protein NCU05516 [Neurospora crassa OR74A]	312.0	[0..4]	[253..12]
gi\|89898170, gi\|... - gi\|89898170\|ref\|YP_515280.1\| biotin apo-protein ligase-related protein [Chlamydophila felis Fe/C-56]...	311.0	[0..3]	[251..2]
gi\|7189558, gi\|1... - gi\|7189558\|gb\|AAF38458.1\| biotin apo-protein ligase-related protein [Chlamydophila pneumoniae AR39],... gi\|8978502, gi\|1... - gi\|8978502\|dbj\|BAA98339.1\| biotin protein ligase [Chlamydophila pneumoniae J138], gi\|15835664\|ref\|NP... gi\|15618052, gi\|... - gi\|4376392\|gb\|AAD18281.1\| Biotin Protein Ligase [Chlamydophila pneumoniae CWL029], gi\|15618052\|ref\|N... gi\|33241465, gi\|... - gi\|33241465\|ref\|NP_876406.1\| biotin--[acetyl-CoA-carboxylase] ligase [Chlamydophila pneumoniae TW-18... Y128_CHLPN - Uncharacterized protein CPn_0128/CP_0643/CPj0128/CpB0130 OS=Chlamydia pneumoniae GN=CPn_0128 PE=3 SV...	310.0	[0..1]	[249..1]
gi\|62185231, gi\|... - gi\|62185231\|ref\|YP_220016.1\| hypothetical protein CAB619 [Chlamydophila abortus S26/3], gi\|62148298\|...	308.0	[0..3]	[252..15]
gi\|238880422 - gi\|238880422\|gb\|EEQ44060.1\| hypothetical protein CAWG_02319 [Candida albicans WO-1] orf19.7645 - orf19.7645 CGDID:CAL0000887 Assembly 19, Contig19-2518 (182803, 180806) CDS, reverse complemented, t... gi\|68473197, gi\|... - gi\|68473197\|ref\|XP_719404.1\| hypothetical protein CaO19.7645 [Candida albicans SC5314], gi\|46441220\|...	305.0	[0..5]	[253..2]
gi\|169783670 - gi\|169783670\|ref\|XP_001826297.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775041 - gi\|83775041\|dbj\|BAE65164.1\| unnamed protein product [Aspergillus oryzae]	305.0	[0..3]	[253..12]
gi\|115395862, gi... - gi\|115395862\|ref\|XP_001213570.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	299.0	[0..3]	[253..10]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMQRILVYS DKGVSPYYLR HTVRWLKQAA FPFQMEVCRV NGQFLIHEPL WEETTQLLVI  60
   61 PGGADVPYHH VLHGLGTARI DNYVREGGAY LGICAGAYFG CAHFSFLEPN GSLLVAKRDL 120
  121 GFFPGMANGP AYDSAFSYTS SSGVLAASLR FTDFPGKSFA LFNGGCYFEN AEDFSEVRVE 180
  181 ARYNDLPGSP AAIISRRLDR GLVVLSGPHI EYLPEFCSLQ EENVVHAREQ IAKNSAGLEE 240
  241 YKQTLIKRLL SNVVEHVLY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.0
Match:	1q7rA
Description:	X-ray crystallographic analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.685168529972684	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: