YRC Public Data Repository - Protein Structure Prediction

Protein:	Y183_PASMU
Organism:	Pasteurella multocida
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y183_PASMU.

Description	E-value	Query Range	Subject Range
gi\|68056914, gi\|... - gi\|68248715\|ref\|YP_247827.1\| NIF3-like protein [Haemophilus influenzae 86-028NP], gi\|68056914\|gb\|AAX...	334.0	[0..1]	[251..29]
gi\|42629283 - gi\|42629283\|ref\|ZP_00154831.1\| COG0327: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|148825622, gi... - gi\|148825622\|ref\|YP_001290375.1\| seryl-tRNA synthetase [Haemophilus influenzae PittEE], gi\|148715782...	333.0	[0..1]	[251..1]
gi\|1074261 - gi\|1074261\|pir\|\|G64142 conserved hypothetical protein HI0105 - Haemophilus influenzae gi\|1573058 - gi\|1573058\|gb\|AAC21783.1\| conserved hypothetical protein [Haemophilus influenzae Rd KW20]	332.0	[0..1]	[251..29]
gi\|145271396, gi... - gi\|145639605\|ref\|ZP_01795209.1\| hypothetical protein CGSHiII_10198 [Haemophilus influenzae PittII], ... gi\|145629013, gi... - gi\|145629013\|ref\|ZP_01784812.1\| seryl-tRNA synthetase [Haemophilus influenzae 22.1-21], gi\|144978516... Y105_HAEIN - UPF0135 protein HI_0105 OS=Haemophilus influenzae GN=HI_0105 PE=1 SV=2 GCH1L_HAEIN - GTP cyclohydrolase 1 type 2 homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ... gi\|42632159 - gi\|42632159\|ref\|ZP_00157697.1\| COG0327: Uncharacterized conserved protein [Haemophilus influenzae R2...	331.0	[0..1]	[251..1]
gi\|170717213, gi... - gi\|32030440\|ref\|ZP_00133290.1\| COG0327: Uncharacterized conserved protein [Haemophilus somnus 2336],...	330.0	[0..1]	[251..5]
gi\|113460808, gi... - gi\|113460808\|ref\|YP_718875.1\| hypothetical protein HS_0663 [Haemophilus somnus 129PT], gi\|112822851\|...	327.0	[0..1]	[251..1]
gi\|50120289, gi\|... - gi\|50120289\|ref\|YP_049456.1\| putative hydrolase-oxidase [Pectobacterium atrosepticum SCRI1043], gi\|4...	325.0	[0..1]	[251..1]
gi\|59711424, gi\|... - gi\|59711424\|ref\|YP_204200.1\| metal-binding protein [Vibrio fischeri ES114], gi\|59479525\|gb\|AAW85312.... gi\|21842144 - gi\|21842144\|gb\|AAM77721.1\|AF474148_3 putative YbgI protein [Vibrio fischeri]	322.0	[0..1]	[250..1]
gi\|110804660, gi... - gi\|110804660\|ref\|YP_688180.1\| putative hydrolase-oxidase [Shigella flexneri 5 str. 8401], gi\|1106142... gi\|30062125, gi\|... - gi\|30062125\|ref\|NP_836296.1\| putative hydrolase-oxidase [Shigella flexneri 2a str. 2457T], gi\|300403... gi\|24050829, gi\|... - gi\|24112012\|ref\|NP_706522.1\| putative hydrolase-oxidase [Shigella flexneri 2a str. 301], gi\|24050829...	320.0	[0..1]	[251..1]
gi\|253972681, gi... - gi\|254160780\|ref\|YP_003043888.1\| conserved metal-binding protein [Escherichia coli B str. REL606], g... gi\|253325364, gi... - gi\|254287568\|ref\|YP_003053316.1\| conserved metal-binding protein [Escherichia coli BL21(DE3)], gi\|25... gi\|194439245, gi... - gi\|83585358\|ref\|ZP_00924005.1\| COG0327: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|242376472, gi... - gi\|251784199\|ref\|YP_002998503.1\| hypothetical protein B21_00659 [Escherichia coli BL21], gi\|24237647...	320.0	[0..1]	[251..1]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALELEQIL NHKLNSQAIS DYAPNGLQVE GKKDIKKIIT GVTASQALIE YAVSQNADAI  60
   61 LVHHGYFWKS ENPCIRGMKG KRIKTLLVND INLYGYHLPL DVHPELGNNA RLAALLEIED 120
  121 LQPLEQGTVS IPVYGTLKTP LTSDAFAARI EQVLKRKPLV CSDNAPHLIR TVGICTGGGQ 180
  181 SYIDLAANQG VDAFISGEVS EQTIHSAREQ GIHFFAAGHH ATERYGIKAL GEWLSQHYDL 240
  241 EVEFKDIDNP A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.221849
Match:	1nmoA
Description:	Structural genomics, protein ybgI, unknown function
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits