YRC Public Data Repository - Protein Structure Prediction

Protein:	Y112_PASMU
Organism:	Pasteurella multocida
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y112_PASMU.

Description	E-value	Query Range	Subject Range
Y090_HAEIN - UPF0001 protein HI_0090 OS=Haemophilus influenzae GN=HI_0090 PE=1 SV=1 Y090_HAEIN - UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_...	220.0	[0..1]	[232..1]
gi\|229845488, gi... - gi\|229845488\|ref\|ZP_04465617.1\| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae 6P18H... gi\|89892365 - gi\|89892365\|gb\|ABD78959.1\| HI0090-like protein [Haemophilus influenzae]	217.0	[0..1]	[233..1]
gi\|68248701, gi\|... - gi\|68248701\|ref\|YP_247813.1\| hypothetical protein NTHI0168 [Haemophilus influenzae 86-028NP], gi\|680...	216.0	[0..1]	[232..1]
gi\|145639591, gi... - gi\|145639591\|ref\|ZP_01795195.1\| hypothetical protein CGSHiII_10128 [Haemophilus influenzae PittII], ... gi\|42632145 - gi\|42632145\|ref\|ZP_00157683.1\| COG0325: Predicted enzyme with a TIM-barrel fold [Haemophilus influen...	215.0	[0..1]	[232..1]
gi\|42629271 - gi\|42629271\|ref\|ZP_00154819.1\| COG0325: Predicted enzyme with a TIM-barrel fold [Haemophilus influen... gi\|145642000, gi... - gi\|145642000\|ref\|ZP_01797572.1\| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae R3021]... gi\|148825633, gi... - gi\|148825633\|ref\|YP_001290386.1\| hypothetical protein CGSHiEE_02835 [Haemophilus influenzae PittEE],... gi\|145642000 - gi\|145642000\|ref\|ZP_01797572.1\| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae R3021]	215.0	[0..1]	[232..1]
gi\|153839183, gi... - gi\|153839183\|ref\|ZP_01991850.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28807626, gi\|... - gi\|28899390\|ref\|NP_798995.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633], gi\|28807626\|dbj\|BAC60879.1... gi\|28807626 - gi\|28807626\|dbj\|BAC60879.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633]	213.0	[0..2]	[232..3]
gi\|78503838, gi\|... - gi\|78688420\|ref\|ZP_00853110.1\| Protein of unknown function UPF0001 [Shewanella sp. ANA-3], gi\|785038...	210.0	[0..2]	[232..3]
gi\|91228687, gi\|... - gi\|91228687\|ref\|ZP_01262601.1\| FkuA [Vibrio alginolyticus 12G01], gi\|91187758\|gb\|EAS74076.1\| FkuA [V...	210.0	[0..2]	[232..3]
gi\|113461358, gi... - gi\|113461358\|ref\|YP_719427.1\| hypothetical protein HS_1215 [Haemophilus somnus 129PT], gi\|112823401\|...	209.0	[0..1]	[229..2]
YPI1_VIBAL - UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1	209.0	[0..2]	[232..3]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIEQNLAQI QQNIQHAVQQ AKRPESAVKL LAVSKTKPVE DIYQAYQAGQ TAFGENYVQE  60
   61 GVEKIQYFAQ KNIPLEWHFI GPLQSNKTKL VAEHFDWMQT LDRKKIADRL NEQRPHYKKP 120
  121 LNVLIQINIS DEDSKSGIQP NEMLDLAKQI QNLPHLCLRG LMAIPAPTDD LATQEQAFTQ 180
  181 MHSLFEQLKQ ALPDAQIDTL SMGMTDDMAS AIQCGSTMVR IGTAIFGARD YSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1w8gA
Description:	No description for 1w8gA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits