YRC Public Data Repository - Protein Structure Prediction

Protein:	Y073_HAEIN
Organism:	Haemophilus influenzae
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y073_HAEIN.

Description	E-value	Query Range	Subject Range
gi\|148825647, gi... - gi\|148825647\|ref\|YP_001290400.1\| hypothetical protein CGSHiEE_02925 [Haemophilus influenzae PittEE],... gi\|68248624, gi\|... - gi\|68248624\|ref\|YP_247736.1\| hypothetical protein NTHI0086 [Haemophilus influenzae 86-028NP], gi\|680... gi\|229846993, gi... - gi\|229846993\|ref\|ZP_04467099.1\| hypothetical protein CGSHi7P49H1_06076 [Haemophilus influenzae 7P49H...	100.0	[0..1]	[114..1]
gi\|58427672 - gi\|58427672\|gb\|AAW76709.1\| restriction endonuclease S subunits [Xanthomonas oryzae pv. oryzae KACC10...	100.0	[0..1]	[101..13]
gi\|42632042 - gi\|42632042\|ref\|ZP_00157580.1\| COG1708: Predicted nucleotidyltransferases [Haemophilus influenzae R2... gi\|145271195, gi... - gi\|145639638\|ref\|ZP_01795241.1\| nucleotidyltransferase [Haemophilus influenzae PittII], gi\|145271195... gi\|145636721, gi... - gi\|145636721\|ref\|ZP_01792387.1\| nucleotidyltransferase [Haemophilus influenzae PittHH], gi\|145270019...	100.0	[0..1]	[114..1]
gi\|121554594, gi... - gi\|121609954\|ref\|YP_997761.1\| restriction modification system DNA specificity subunit [Verminephroba...	97.0	[0..1]	[110..1]
gi\|84624917, gi\|... - gi\|84624917\|ref\|YP_452289.1\| hypothetical protein XOO_3260 [Xanthomonas oryzae pv. oryzae MAFF 31101...	97.0	[0..1]	[101..1]
gi\|94266352, gi\|... - gi\|94266352\|ref\|ZP_01290053.1\| DNA polymerase, beta-like region [delta proteobacterium MLMS-1], gi\|9...	95.0	[0..5]	[113..1]
gi\|110547001, gi... - gi\|222056372\|ref\|YP_002538734.1\| DNA polymerase beta domain protein region [Geobacter sp. FRC-32], g...	91.0	[0..3]	[107..2]
gi\|53798997 - ref\|ZP_00359218.1\| COG1708: Predicted nucleotidyltransferases [Chloroflexus aurantiacus] gi\|76165775, gi\|... - gi\|76259248\|ref\|ZP_00766898.1\| DNA polymerase, beta-like region [Chloroflexus aurantiacus J-10-fl], ... gi\|222450218, gi... - gi\|222526339\|ref\|YP_002570810.1\| DNA polymerase beta domain protein region [Chloroflexus sp. Y-400-f...	88.0	[0..5]	[105..1]
gi\|20807199, gi\|... - gi\|20807199\|ref\|NP_622370.1\| nucleotidyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515... gi\|20807199 - gi\|20807199\|ref\|NP_622370.1\| predicted nucleotidyltransferase [Thermoanaerobacter tengcongensis MB4]	88.0	[0..6]	[110..5]
gi\|146396705, gi... - gi\|88936580\|ref\|ZP_01142186.1\| conserved hypothetical protein [Geobacter uraniumreducens Rf4], gi\|88...	88.0	[0..3]	[104..6]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFAQLDIK SEELAIVKTI LQQLVPDYTV WAFGSRVKGK AKKYSDLDLA IISEEPLDFL  60
   61 ARDRLKEAFS ESDLPWRVDL LDWATTSEDF REIIRKVYVV IQEKEKTVEK PTAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1no5A
Description:	Structure of HI0073 from Haemophilus influenzae, the nucleotide binding domain of the HI0073/HI0074 two protein nucleotidyl transferase.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.356340974097258	bayes_pls_golite062009
transferase activity	0.128557590939593	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0899915805908343	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: