YRC Public Data Repository - Protein Structure Prediction

Protein:	WH11_CANAL, WHS1...
Organism:	Candida albicans
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WH11_CANAL, WHS1....

Description	E-value	Query Range	Subject Range
gi\|57228324, gi\|... - gi\|58269864\|ref\|XP_572088.1\| 12 kda heat shock protein (glucose and lipid-regulated protein) [Crypto...	94.0	[0..1]	[64..62]
orf19.10669, orf... - HSP12 CGDID:CAL0002358 Assembly 19, Contig19-20170 (5849, 6355) CDS, translated using codon table 12... gi\|46442534, gi\|... - gi\|68482620\|ref\|XP_714708.1\| hypothetical protein CaO19.10669 [Candida albicans SC5314], gi\|68470563...	81.0	[0..1]	[60..42]
gi\|1742028 - gi\|1742028\|dbj\|BAA14033.1\| Sc-Hsp12p [Saccharomyces pastorianus] HSP12 - Plasma membrane localized protein that protects membranes from desiccation; induced by heat shock, o... HSP12_YEAST - 12 kDa heat shock protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSP12 PE=1 SV=...	80.0	[0..1]	[59..1]
gi\|49527199, gi\|... - gi\|50290911\|ref\|XP_447888.1\| unnamed protein product [Candida glabrata], gi\|49527199\|emb\|CAG60837.1\|... gi\|49527199 - gi\|49527199\|emb\|CAG60837.1\| unnamed protein product [Candida glabrata]	77.0	[0..1]	[59..1]
gi\|70992549, gi\|... - gi\|70992549\|ref\|XP_751123.1\| chaperone/heat shock protein Hsp12 [Aspergillus fumigatus Af293], gi\|66... gi\|159124695 - gi\|159124695\|gb\|EDP49813.1\| chaperone/heat shock protein Hsp12, putative [Aspergillus fumigatus A116...	75.0	[0..1]	[60..1]
gi\|50306855, gi\|... - gi\|50306855\|ref\|XP_453403.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642537\|emb\|CAH0049... gi\|49642537 - gi\|49642537\|emb\|CAH00499.1\| KLLA0D07634p [Kluyveromyces lactis]	74.0	[0..1]	[59..1]
gi\|1742030 - gi\|1742030\|dbj\|BAA14034.1\| Lg-Hsp12p [Saccharomyces pastorianus]	74.0	[0..1]	[59..1]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLGRKDIG DKIESKLTPD SQKSTPEQFK DKVTDSLDSA AGKATSENDK SFVQKASDAI  60
   61 FGDSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.327902
Match:	PF04119.3
Description:	No description for PF04119.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.709	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.709	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.697	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.653	N/A	N/A	a.272.1	Description not found.
View	Download	0.539	N/A	N/A	a.57.1	Protein HNS-dependent expression A; HdeA
View	Download	0.539	N/A	N/A	a.57.1	Protein HNS-dependent expression A; HdeA
View	Download	0.514	N/A	N/A	a.272.1	Description not found.
View	Download	0.484	N/A	N/A	a.126.1	Serum albumin-like
View	Download	0.404	N/A	N/A	a.126.1	Serum albumin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits