YRC Public Data Repository - Protein Structure Prediction

Protein:	WCAA_ECOLI
Organism:	Escherichia coli
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WCAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|17230563, gi\|... - gi\|17230563\|ref\|NP_487111.1\| hypothetical protein alr3071 [Nostoc sp. PCC 7120], gi\|17132165\|dbj\|BAB... gi\|25534581 - pir\|\|AH2189 hypothetical protein alr3071 [imported] - Nostoc sp. (strain PCC 7120)	195.0	[0..5]	[279..2]
gi\|75700788, gi\|... - gi\|75907063\|ref\|YP_321359.1\| glycosyl transferase family protein [Anabaena variabilis ATCC 29413], g...	194.0	[0..5]	[279..2]
gi\|193062842, gi... - gi\|75259197\|ref\|ZP_00730545.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... gi\|82543436, gi\|... - gi\|82543436\|ref\|YP_407383.1\| glycosyl transferase [Shigella boydii Sb227], gi\|81244847\|gb\|ABB65555.1... gi\|13362332, gi\|... - gi\|15832118\|ref\|NP_310891.1\| putative glycosyl transferase [Escherichia coli O157:H7 str. Sakai], gi... gi\|217317438, gi... - gi\|217329670\|ref\|ZP_03445749.1\| colanic acid biosynthesis glycosyl transferase WcaA [Escherichia col... gi\|110615576, gi... - gi\|110806028\|ref\|YP_689548.1\| glycosyl transferase [Shigella flexneri 5 str. 8401], gi\|110615576\|gb\|... gi\|215265354, gi... - gi\|215487282\|ref\|YP_002329713.1\| putative glycosyl transferase [Escherichia coli O127:H6 str. E2348/... gi\|218427681, gi... - gi\|218690117\|ref\|YP_002398329.1\| putative glycosyl transferase [Escherichia coli ED1a], gi\|218427681... gi\|218554627, gi... - gi\|218554627\|ref\|YP_002387540.1\| putative glycosyl transferase [Escherichia coli IAI1], gi\|218361395... gi\|168986384, gi... - gi\|168986384\|dbj\|BAG11923.1\| predicted glycosyl transferase WcaA [Escherichia coli O55:H7], gi\|16898... gi\|218352414, gi... - gi\|218695682\|ref\|YP_002403349.1\| putative glycosyl transferase [Escherichia coli 55989], gi\|21835241... gi\|124528692, gi... - gi\|124528692\|ref\|ZP_01699950.1\| glycosyl transferase, family 2 [Escherichia coli B], gi\|124500379\|gb... gi\|191169634, gi... - gi\|75226903\|ref\|ZP_00713792.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... gi\|168986441 - gi\|168986441\|dbj\|BAG11979.1\| predicted glycosyl transferase WcaA [Escherichia coli O55:H6] gi\|209748044, gi... - pir\|\|H90986 probable regulator [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952... gi\|15802539, gi\|... - gi\|15802539\|ref\|NP_288565.1\| glycosyl transferase [Escherichia coli O157:H7 EDL933], gi\|12516253\|gb\|... gi\|13362332, gi\|... - gi\|15832118\|ref\|NP_310891.1\| putative regulator [Escherichia coli O157:H7], gi\|13362332\|dbj\|BAB36287... gi\|168788729, gi... - gi\|189371588\|gb\|EDU90004.1\| colanic acid biosynthesis glycosyl transferase WcaA [Escherichia coli O1... gi\|168761802, gi... - gi\|189367778\|gb\|EDU86194.1\| colanic acid biosynthesis glycosyl transferase WcaA [Escherichia coli O1... gi\|209919524, gi... - gi\|209919524\|ref\|YP_002293608.1\| putative glycosyl transferase [Escherichia coli SE11], gi\|209912783... gi\|169754542, gi... - gi\|170019614\|ref\|YP_001724568.1\| putative glycosyl transferase [Escherichia coli ATCC 8739], gi\|1697... gi\|227835463, gi... - gi\|227887113\|ref\|ZP_04004918.1\| glycosyl transferase [Escherichia coli 83972], gi\|227835463\|gb\|EEJ45...	180.0	[0..1]	[279..1]
gi\|157154928, gi... - gi\|75186857\|ref\|ZP_00700124.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche...	180.0	[0..1]	[279..1]
gi\|73856061, gi\|... - gi\|74312584\|ref\|YP_311003.1\| glycosyl transferase [Shigella sonnei Ss046], gi\|73856061\|gb\|AAZ88768.1...	179.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNNPLISIY MPTWNRQQLA IRAIKSVLRQ DYSNWEMIIV DDCSTSWEQL QQYVTALNDP  60
   61 RITYIHNDIN SGACAVRNQA IMLAQGEYIT GIDDDDEWTP NRLSVFLAHK QQLVTHAFLY 120
  121 ANDYVCQGEV YSQPASLPLY PKSPYSRRLF YKRNIIGNQV FTWAWRFKEC LFDTELKAAQ 180
  181 DYDIFLRMVV EYGEPWKVEE ATQILHINHG EMQITSSPKK FSGYFHFYRK HKDKFDRASK 240
  241 KYQLFTLYQI RNKRMTWRTL LTLLSVRNGK RLADGIRGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2d7iA
Description:	No description for 2d7iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits