YRC Public Data Repository - Protein Structure Prediction

Protein:	VIRG_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIRG_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|134051275, gi... - gi\|88945490\|ref\|ZP_01148660.1\| Response regulator receiver [Desulfotomaculum reducens MI-1], gi\|8892...	226.0	[0..13]	[241..1]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	226.0	[0..15]	[239..5]
gi\|77996843, gi\|... - gi\|78044728\|ref\|YP_360866.1\| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-290...	225.0	[0..14]	[242..1]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	223.0	[0..15]	[242..4]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	222.0	[0..13]	[245..11]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	221.0	[0..13]	[245..3]
gi\|220931316, gi... - gi\|89209804\|ref\|ZP_01188198.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	221.0	[0..15]	[245..6]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	221.0	[0..9]	[242..100]
gi\|167039802, gi... - gi\|167039802\|ref\|YP_001662787.1\| two component transcriptional regulator [Thermoanaerobacter sp. X51... gi\|20517480, gi\|... - gi\|20808829\|ref\|NP_624000.1\| response regulator [Thermoanaerobacter tengcongensis MB4], gi\|20517480\|... gi\|20808829 - gi\|20808829\|ref\|NP_624000.1\| Response regulators consisting of a CheY-like receiver domain and a HTH...	220.0	[0..14]	[239..3]
gi\|229497231, gi... - gi\|229497231\|ref\|ZP_04390932.1\| two component transcriptional regulator, winged helix family [Geobac... gi\|56421267, gi\|... - gi\|56421267\|ref\|YP_148585.1\| two-component response regulator (phosphate regulation) [Geobacillus ka... gi\|221088131, gi... - gi\|221088131\|ref\|ZP_03557664.1\| two component transcriptional regulator, winged helix family [Geobac...	220.0	[0..13]	[242..2]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQDPRLRG EPLKHVLVID DDVAMRHLIV EYLTIHAFKV TAVADSKQFN RVLCSETVDV  60
   61 VVVDLNLGRE DGLEIVRSLA TKSDVPIIII SGARLEEADK VIALELGATD FIAKPFGTRE 120
  121 FLARIRVALR VRPSVARTKD RRSFSFADWT LNLRRRRLIS EEGSEVKLTA GEFNLLVAFL 180
  181 EKPRDVLSRE QLLIASRVRE EEVYDRSIDV LILRLRRKLE GDPTTPQLIK TARGAGYFFD 240
  241 ADVDVSYGGV MAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits