YRC Public Data Repository - Protein Structure Prediction

Protein:	VIRD1_AGRRH
Organism:	Agrobacterium rhizogenes
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIRD1_AGRRH.

Description	E-value	Query Range	Subject Range
gi\|15163441 - gi\|15163441\|gb\|AAK90943.1\| AGR_pTi_19p [Agrobacterium tumefaciens str. C58]	241.0	[0..1]	[147..36]
gi\|154795 - gi\|154795\|gb\|AAA91603.1\| virD1 [Plasmid Ti] gi\|142285, gi\|95... - pir\|\|A37763 virD1 protein - Agrobacterium tumefaciens plasmid pTiC58, gi\|737140\|prf\|\|1921363P virD1... VIRD1_AGRFC - T-DNA border endonuclease virD1 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=virD1 PE=1 SV=1	232.0	[0..1]	[147..1]
gi\|86359769, gi\|... - gi\|86359769\|ref\|YP_471660.1\| T-DNA border endonuclease, VirD1 protein [Rhizobium etli CFN 42], gi\|86...	221.0	[0..5]	[147..4]
gi\|10567477, gi\|... - gi\|10954813\|ref\|NP_066748.1\| hypothetical protein pRi1724_p168 [Agrobacterium rhizogenes], gi\|105674...	217.0	[0..1]	[147..1]
gi\|115259661, gi... - gi\|116255013\|ref\|YP_770848.1\| putative endonuclease [Rhizobium leguminosarum bv. viciae 3841], gi\|11...	175.0	[0..10]	[146..11]
gi\|154711 - gi\|154711\|gb\|AAA98365.1\| virulence protein	170.0	[0..1]	[105..1]
gi\|115292954, gi... - gi\|115345633\|ref\|YP_771815.1\| VirD1 [Roseobacter denitrificans OCh 114], gi\|115292954\|gb\|ABI93407.1\|...	156.0	[0..26]	[146..21]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGSKPTSS DIAINQRVGA TVEGFRVVST RLRSAEYESF SHQARLLGLS DSMAIRVAVR  60
   61 RIGGFLEIDA ETRHKMEAIL LSIGTLSSNI AALLSAYAEN PTMDLEALRA ERIAFGESFA 120
  121 DLDGLLRSIL SVSRRRIDGC SMLKDSL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	108.022276
Match:	PF07328.2
Description:	No description for PF07328.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
protein binding	1.04317669687481	bayes_pls_golite062009
binding	0.852034642976937	bayes_pls_golite062009
catalytic activity	0.0923673712862126	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: