YRC Public Data Repository - Protein Structure Prediction

Protein:	VIRB7_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIRB7_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|18033168 - gi\|18033168\|gb\|AAL57015.1\|AF329849_9 VirB7 [Agrobacterium tumefaciens]	108.0	[0..1]	[53..1]
gi\|1196979 - gi\|1196979\|gb\|AAA88652.1\| unknown protein	107.0	[0..1]	[54..5]
gi\|158322267, gi... - gi\|190404471\|ref\|YP_001961102.1\| rcorf127 [Agrobacterium rhizogenes], gi\|158322267\|gb\|ABW33684.1\| rc...	103.0	[0..1]	[53..1]
gi\|86283855, gi\|... - gi\|86359753\|ref\|YP_471644.1\| transport secretion system IV, VirB7 protein [Rhizobium etli CFN 42], g...	93.0	[0..1]	[55..1]
gi\|20803878 - gi\|20803878\|emb\|CAD31456.1\| PROBABLE VIRB7 TYPE IV SECRETION PROTEIN [Mesorhizobium loti]	65.0	[0..1]	[45..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYCLLCLAL ALGGCQTNDK LASCKGPIFP LNVGRWQPTP SDLQLSNVGG RHEGV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.619789
Match:	PF07269.2
Description:	No description for PF07269.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits