YRC Public Data Repository - Protein Structure Prediction

Protein:	VIRB5_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIRB5_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|18033166 - gi\|18033166\|gb\|AAL57013.1\|AF329849_7 VirB5 [Agrobacterium tumefaciens]	343.0	[0..1]	[218..1]
gi\|10954803, gi\|... - gi\|10954803\|ref\|NP_066738.1\| hypothetical protein pRi1724_p158 [Agrobacterium rhizogenes], gi\|105674...	334.0	[0..1]	[218..1]
gi\|20803880 - gi\|20803880\|emb\|CAD31458.1\| PROBABLE VIRB5 TYPE IV SECRETION PROTEIN [Mesorhizobium loti]	306.0	[0..1]	[216..1]
gi\|86283853, gi\|... - gi\|86359751\|ref\|YP_471642.1\| transport secretion system IV, VirB5 protein [Rhizobium etli CFN 42], g...	297.0	[0..1]	[220..1]
gi\|113722308, gi... - gi\|150378122\|ref\|YP_001314717.1\| putative virB5 gene [Sinorhizobium medicae WSM419], gi\|150032669\|gb...	242.0	[0..1]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIMQLVAAA MAVSLLSVGP ARAQFVVSDP ATEAETLATA LETAANLEQT ITMVAMLTSA  60
   61 YGVTGLLTSL NQKNQYPSTR DLDTEMFSPR MPMSTTARAI TTDTDRAVVG GDAEADLLRS 120
  121 QITGSANSAG IAADNLETMD KRLTANAETS TQLSRSRNIM QATVTNGLLL KQIHDAMIQN 180
  181 VQATSLLTMT TAQAGLHEAE EAAAQRKEHQ KTAVIFGAVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits