YRC Public Data Repository - Protein Structure Prediction

Protein:	VIRB2_AGRT9
Organism:	Agrobacterium tumefaciens (strain 15955)
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIRB2_AGRT9.

Description	E-value	Query Range	Subject Range
gi\|1196973 - gi\|1196973\|gb\|AAA88646.1\| unknown protein VIRB2_RHIRD - Protein virB2 OS=Rhizobium radiobacter GN=virB2 PE=1 SV=1	125.0	[0..1]	[121..1]
gi\|5669003 - gi\|5669003\|gb\|AAD46129.1\|AF078924_8 putative TrbC [Plasmid pM3]	124.0	[0..7]	[121..32]
gi\|18150993, gi\|... - gi\|18150993\|ref\|NP_542930.1\| putative mating pair formation protein [Pseudomonas putida], gi\|1807723...	122.0	[0..7]	[121..32]
gi\|86283929, gi\|... - gi\|86359827\|ref\|YP_471718.1\| transport secretion system IV, VirB2 protein [Rhizobium etli CFN 42], g...	117.0	[0..1]	[120..2]
gi\|190404466, gi... - gi\|190404466\|ref\|YP_001961097.1\| rcorf122 [Agrobacterium rhizogenes], gi\|158322262\|gb\|ABW33679.1\| rc...	102.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCFERYRLH LNRLSLSNAM MRVISSCAPS LGGAMAWSIS SCGPAAAQSA GGGTDPATMV  60
   61 NNICTFILGP FGQSLAVLGI VAIGISWMFG RASLGLVAGV VGGIVIMFGA SFLGQTLTGG 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.60206
Match:	PF04956.4
Description:	No description for PF04956.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits