YRC Public Data Repository - Protein Structure Prediction

Protein:	gpdh-2
Organism:	Caenorhabditis elegans
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpdh-2.

Description	E-value	Query Range	Subject Range
gpdh-2 - status:Confirmed UniProt:P34517 protein_id:CAD54146.1	286.0	[0..1]	[360..33]
gi\|187031421, gi... - gi\|39590728\|emb\|CAE65098.1\| Hypothetical protein CBG09958 [Caenorhabditis briggsae], gi\|187031421\|em... gi\|157774327 - gi\|157774327\|ref\|XP_001665229.1\| hypothetical protein CBG09958 [Caenorhabditis briggsae AF16]	273.0	[0..1]	[360..1]
GPDA_RAT - Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Rattus norvegicus GN=Gpd1 PE=1 SV=4	270.0	[0..1]	[360..1]
gi\|99031626 - gi\|99031626\|pdb\|1X0X\|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Co...	270.0	[0..1]	[360..6]
gi\|60810758 - gi\|60810758\|gb\|AAX36153.1\| glycerol-3-phosphate dehydrogenase 1 [synthetic construct]	270.0	[0..1]	[360..1]
gi\|114644817, gi... - gi\|114644817\|ref\|XP_001154996.1\| PREDICTED: glycerol-3-phosphate dehydrogenase 1 (soluble) isoform 3...	269.0	[0..1]	[360..1]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPKKVTIIG SGNWGSAIAR IVGSTTKSFP DEFDPTVRMW VFEEIVNGEK LSEVINNRHE  60
   61 NIKYLPGKVL PNNVVAVTDL VESCEGSNVL VFVVPHQFVK GICEKLVGKI PADTQAISLI 120
  121 KGISFDKTNQ GVSTEKRGGL KLISEEIKEI LKIEVSVLMG ANLAPEVAND NFCEATIGCK 180
  181 RKAEDGPLLK KLFHTDNFRI NVVEDAHTVE LCGALKNVVA CAAGFTDGLG YGDNTKAAVI 240
  241 RLGLMETTKF VEHYYPGSNL QTFFESCGIA DLITTCYGGR NRKVCEAFVK TGKSMAEVEK 300
  301 ELLNGQSAQG PLTAEEVYLM MHKTGLDAKF PLFTAVHKIC AGEMKPAELV DCLRNHPEHM 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.522879
Match:	1x0vA
Description:	No description for 1x0vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits