YRC Public Data Repository - Protein Structure Prediction

Protein:	CE41354
Organism:	Caenorhabditis elegans
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41354.

Description	E-value	Query Range	Subject Range
APMAP_RAT - Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2	220.0	[0..5]	[338..50]
APMAP_CHICK - Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1	215.0	[0..5]	[338..89]
APMAP_MOUSE - Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1	215.0	[0..5]	[338..89]
gi\|37183270 - gi\|37183270\|gb\|AAQ89435.1\| C20orf3 [Homo sapiens]	214.0	[0..5]	[338..46]
APMAP_DANRE - Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1	213.0	[0..5]	[338..89]
gi\|114681318 - gi\|114681318\|ref\|XP_514556.2\| PREDICTED: chromosome 20 open reading frame 3 isoform 2 [Pan troglodyt...	213.0	[0..5]	[338..90]
gi\|109093153 - gi\|109093153\|ref\|XP_001098577.1\| PREDICTED: chromosome 20 open reading frame 3 isoform 2 [Macaca mul...	212.0	[0..5]	[338..90]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSKKLSIL EGQVIGPESM VVDDEAIYVS VNDAKVLKIV DGKVRATAVY SKNPIFPPNM  60
   61 TRFEAEAICG RPLGIRKLVE GTKKFVLVDA YLGVFIIDFS DELRPKSTQI LDASKPIDGF 120
  121 RPNFLNDLDV ISEDELIITH SSIRHDCRHF FNLVLEHQGD GRILHLKIST GTVKVLAKNL 180
  181 YFPNGIQLTP DKKSAIFAEC SMARIKKLDL ETGKIDIFCE NLPGLPDNIR GTPRGTFWVG 240
  241 LAATRSKNYP SLLDRLGNWP GVRQFFVDIV PAAHWMKILV FSKHPHSIIV ELDSNGKIIR 300
  301 SLHDVTGKHV SDVSQVTEHN GFLYLGSFAD TYIAKVEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1v04A
Description:	serum paraoxonase by directed evolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits