YRC Public Data Repository - Protein Structure Prediction

Protein:	CE41351
Organism:	Caenorhabditis elegans
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41351.

Description	E-value	Query Range	Subject Range
gi\|187025637, gi... - gi\|39594985\|emb\|CAE70853.1\| Hypothetical protein CBG17638 [Caenorhabditis briggsae], gi\|187025637\|em... gi\|157758211 - gi\|157758211\|ref\|XP_001671449.1\| Hypothetical protein CBG17638 [Caenorhabditis briggsae AF16]	181.0	[0..4]	[332..3]
gi\|7488829, gi\|3... - pir\|\|T06385 probable Fe(II) transport protein, root - garden pea, gi\|3153889\|gb\|AAC17441.1\| root iro...	174.0	[0..3]	[305..40]
gi\|38036062 - gi\|38036062\|gb\|AAR08414.1\| metal transport protein [Medicago truncatula]	172.0	[0..3]	[305..58]
gi\|46577788 - gi\|46577788\|gb\|AAT01414.1\| iron regulated transporter [Cucumis sativus]	172.0	[0..3]	[305..39]
gi\|47575691, gi\|... - gi\|47575691\|gb\|AAT35823.1\| root iron transporter protein [Malus xiaojinensis], gi\|27549575\|gb\|AAO170...	170.0	[0..3]	[305..47]
gi\|9716482, gi\|4... - gi\|9716482\|gb\|AAF97510.1\|AF246266_2 iron-regulated transporter 2 [Lycopersicon esculentum], gi\|48367...	166.0	[0..3]	[305..41]
ZIP8_ARATH - Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1	166.0	[0..5]	[305..46]
gi\|60592456 - gi\|60592456\|gb\|AAX28838.1\| zinc transporter protein ZIP2 [Fragaria x ananassa]	165.0	[0..3]	[305..38]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGGYLALQ SVLALVLLVV TAVAGSAPLL LLTFLKKKGK DQNDSGWLSY LSCFSGGVFM  60
   61 ATCFLDVMPH VQQTYGEILE TYNVEFRLPM NQLFICVGFF FVYLIEEITA KVFGSGGHGH 120
  121 SHGPPIPLTV DIKKEKVTSL VVEETAPW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVSDEKRNLL KSLTFAIAMS FHSLLEGFAL GVQDSDAAIW TLFLSLLLHK SIEAFSVGLQ  60
   61 ISRANTEKKG IVMCTILVYA LMTPLGSVLG TLLQNTGDKS FGKDCTIVFL EAMAAGTFIY 120
  121 VTFLEILAAE KENRFNSLKQ LLCIGLGFMV ILALQFFFGH EGHGHGHPDH GVPSPSALPS 180
  181 PSFSFAPAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits