YRC Public Data Repository - Protein Structure Prediction

Protein:	unc-69
Organism:	Caenorhabditis elegans
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for unc-69.

Description	E-value	Query Range	Subject Range
gi\|109075704 - gi\|109075704\|ref\|XP_001089419.1\| PREDICTED: similar to short coiled-coil protein isoform 6 [Macaca m...	143.0	[0..2]	[108..4]
gi\|14211843, gi\|... - gi\|14211843\|ref\|NP_115936.1\| short coiled-coil protein [Homo sapiens], gi\|14042741\|dbj\|BAB55375.1\| u...	140.0	[0..2]	[108..4]
gi\|226528328, gi... - gi\|226528328\|ref\|NP_001147057.1\| short coiled-coil protein isoform 4 [Homo sapiens], gi\|226528258\|re... gi\|114596133, gi... - gi\|114596135\|ref\|XP_001139353.1\| PREDICTED: short coiled-coil protein isoform 3 [Pan troglodytes], g... h0019632 - null	140.0	[0..2]	[108..4]
gi\|32409009, gi\|... - gi\|32409009\|ref\|XP_324985.1\| predicted protein [Neurospora crassa], gi\|28925541\|gb\|EAA34569.1\| conse... gi\|85111160 - gi\|85111160\|ref\|XP_963805.1\| hypothetical protein NCU00805 [Neurospora crassa OR74A]	137.0	[0..2]	[106..47]
gi\|73983898 - gi\|73983898\|ref\|XP_848367.1\| PREDICTED: similar to short coiled-coil protein isoform 1 [Canis famili...	137.0	[0..2]	[108..4]
gi\|76638444 - gi\|76638444\|ref\|XP_580345.2\| PREDICTED: similar to short coiled-coil protein [Bos taurus]	136.0	[0..8]	[108..17]
gi\|149037914, gi... - gi\|62665053\|ref\|XP_574217.1\| PREDICTED: similar to short coiled-coil protein [Rattus norvegicus], gi...	133.0	[0..1]	[108..7]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKTEQDDI PLADDDDTVT IISGGKTPRA AQPLPKEEPP EDPEEKARMI TQVLELQNTL  60
   61 DDLSQRVESV KEESLKLRSE NQVLGQYIQN LMSSSSVFQS S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.38
Match:	1gd2E
Description:	PAP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [102-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPSRPKHSRR RFWRVRILEI RPIVNRRCPY HSLSFVSRAQ FAQQKFSYRV QPAYFIFFTF  60
   61 SVRFFITFLC LCEYI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits