YRC Public Data Repository - Protein Structure Prediction

Protein:	VATF_NEUCR
Organism:	Neurospora crassa
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATF_NEUCR.

Description	E-value	Query Range	Subject Range
gi\|67539420, gi\|... - gi\|67539420\|ref\|XP_663484.1\| hypothetical protein AN5880.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	192.0	[0..1]	[124..1]
VATF_NEOFI - V-type proton ATPase subunit F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / N... gi\|66853104, gi\|... - gi\|71001570\|ref\|XP_755466.1\| V-type ATPase F subunit [Aspergillus fumigatus Af293], gi\|66853104\|gb\|E... gi\|159129535 - gi\|159129535\|gb\|EDP54649.1\| V-type ATPase F subunit, putative [Aspergillus fumigatus A1163]	189.0	[0..1]	[124..1]
gi\|46136143, gi\|... - gi\|46136143\|ref\|XP_389763.1\| VATF_NEUCR Vacuolar ATP synthase subunit F (V-ATPase F subunit) (Vacuol...	185.0	[0..3]	[124..2]
gi\|90299822, gi\|... - gi\|90299822\|gb\|EAS29453.1\| vacuolar ATP synthase subunit F [Coccidioides immitis RS], gi\|119178798\|r... gi\|240104720 - gi\|240104720\|gb\|EER22916.1\| vacuolar ATP synthase subunit F, putative [Coccidioides posadasii C735 d...	185.0	[0..1]	[124..1]
gi\|83769819 - gi\|83769819\|dbj\|BAE59954.1\| unnamed protein product [Aspergillus oryzae] gi\|169774977 - gi\|169774977\|ref\|XP_001821956.1\| hypothetical protein [Aspergillus oryzae RIB40]	183.0	[0..5]	[124..2]
gi\|111058731, gi... - gi\|169618722\|ref\|XP_001802774.1\| hypothetical protein SNOG_12553 [Phaeosphaeria nodorum SN15], gi\|11...	182.0	[0..1]	[124..1]
gi\|39951827, gi\|... - gi\|39951827\|ref\|XP_363630.1\| vacuolar ATP synthase subunit F [Magnaporthe grisea 70-15], gb\|EAA55905...	182.0	[0..5]	[124..7]
gi\|50553200, gi\|... - gi\|50553200\|ref\|XP_504010.1\| YALI0E16192p [Yarrowia lipolytica], gi\|49649879\|emb\|CAG79603.1\| unnamed... gi\|49649879 - gi\|49649879\|emb\|CAG79603.1\| YALI0E16192p [Yarrowia lipolytica]	169.0	[0..1]	[124..1]
gi\|88180793, gi\|... - gi\|88180793\|gb\|EAQ88261.1\| vacuolar ATP synthase subunit F [Chaetomium globosum CBS 148.51], gi\|1161...	166.0	[0..3]	[124..2]
ATP6V1F - ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F gi\|114658592, gi... - gi\|114658594\|ref\|XP_001160789.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 14kD, V1 s...	164.0	[0..7]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSQADARD RQFLAVIGDE DSVTGLLLAG IGHVTAPPDS QKNFLVVDNK TDNAAIEAAF  60
   61 DRFTTERKDI GIVLINQHIA DRIRHRVDTH TAAFPTVLEI PSKDHPYDPE KDSVLRRVRR 120
  121 LFGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	2qaiA
Description:	No description for 2qaiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits