YRC Public Data Repository - Protein Structure Prediction

Protein:	VATF_ANOGA
Organism:	Anopheles gambiae
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATF_ANOGA.

Description	E-value	Query Range	Subject Range
VATF_AEDAE - V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2 SV=1	181.0	[0..1]	[127..1]
VATF_ANOGA - V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2 gi\|55242303, gi\|... - gi\|58383226\|ref\|XP_312465.2\| AGAP002473-PA [Anopheles gambiae str. PEST], gi\|55242303\|gb\|EAA08191.2\|...	181.0	[0..1]	[127..1]
VATF1_DROPS - V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2 VATF1_DROPS - Vacuolar ATP synthase subunit F - Drosophila pseudoobscura (Fruit fly) gi\|195171787, gi... - gi\|195171787\|ref\|XP_002026685.1\| GL11862 [Drosophila persimilis], gi\|194111611\|gb\|EDW33654.1\| GL1186...	181.0	[0..1]	[124..1]
gi\|194193659, gi... - gi\|195583692\|ref\|XP_002081650.1\| GD25605 [Drosophila simulans], gi\|194193659\|gb\|EDX07235.1\| GD25605 ... gi\|195488498, gi... - gi\|195488498\|ref\|XP_002092341.1\| GE14140 [Drosophila yakuba], gi\|194178442\|gb\|EDW92053.1\| GE14140 [D... gi\|194125972, gi... - gi\|195334675\|ref\|XP_002034002.1\| GM20126 [Drosophila sechellia], gi\|194125972\|gb\|EDW48015.1\| GM20126... Vha14-PA - The gene Vacuolar H<sup>+</sup> ATPase 14kD subunit is referred to in FlyBase by the symbol Dmel\Vha... gi\|194882763, gi... - gi\|194882763\|ref\|XP_001975480.1\| GG22339 [Drosophila erecta], gi\|190658667\|gb\|EDV55880.1\| GG22339 [D...	180.0	[0..1]	[124..1]
gi\|91076898 - gi\|91076898\|ref\|XP_975016.1\| PREDICTED: similar to vacuolar ATP synthase subunit F [Tribolium castan...	179.0	[0..1]	[123..1]
gi\|95102930, gi\|... - gi\|95102930\|gb\|ABF51406.1\| vacuolar ATP synthase subunit F [Bombyx mori], gi\|114052036\|ref\|NP_001040...	174.0	[0..1]	[124..1]
VATF_MANSE - V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1	174.0	[0..1]	[124..1]
gi\|66529931 - gi\|66529931\|ref\|XP_624852.1\| PREDICTED: similar to Vacuolar H+ ATPase 14kD subunit CG8210-PA [Apis m...	172.0	[0..1]	[122..1]
ATP6V1F - ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F gi\|114658592, gi... - gi\|114658594\|ref\|XP_001160789.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 14kD, V1 s...	172.0	[0..6]	[122..2]
gi\|89473728, gi\|... - gi\|89473728\|gb\|ABD72676.1\| putative vacuolar ATP synthase subunit F [Acyrthosiphon pisum], gi\|239789...	171.0	[0..1]	[122..1]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLSAMKGK LISVIGHEDT CVGFLLGGVG EINKNRHPNF MVVDKNTAVS EIEDCFKRFI  60
   61 KRDDIDIIVI NQNYAELIRH VIDSHTAPTP ADVEIPSKDH PYDASKDSIL RRAKGMFNPE 120
  121 DMIANRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2qaiA
Description:	No description for 2qaiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits