YRC Public Data Repository - Protein Structure Prediction

Protein:	VATA_PLAFA
Organism:	Plasmodium falciparum
Length:	611 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATA_PLAFA.

Description	E-value	Query Range	Subject Range
gi\|109493234, gi... - gi\|34869154\|ref\|XP_340988.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit A, isoform 1 ...	622.0	[0..1]	[610..6]
VATA_MOUSE - V-type proton ATPase catalytic subunit A OS=Mus musculus GN=Atp6v1a PE=1 SV=2	621.0	[0..1]	[610..6]
gi\|27806225, gi\|... - gi\|75775489\|gb\|AAI05146.1\| ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A [Bos taurus], gi\|2...	620.0	[0..1]	[610..7]
gi\|109033102 - gi\|109033102\|ref\|XP_001106889.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 70kD, V1 s...	619.0	[0..1]	[610..6]
gi\|61369689, gi\|... - gi\|61369694\|gb\|AAX43375.1\| ATPase H+ transporting lysosomal 70kDa V1 subunit A [synthetic construct]...	619.0	[0..1]	[610..6]
ATP6V1A - ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A gi\|61359638 - gi\|61359638\|gb\|AAX41746.1\| ATPase H+ transporting lysosomal 70kDa V1 subunit A [synthetic construct]	619.0	[0..1]	[610..6]
gi\|55926160, gi\|... - gi\|55926160\|ref\|NP_001007512.1\| ATPase, H+ transporting, lysosomal V1 subunit A [Xenopus (Silurana) ...	618.0	[0..1]	[610..6]

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Predicted Domain #1

Region A:
Residues: [1-611]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVAVEKEE PGVVYKVAGS LVIAENMSGT RMYELAKVGW NKLVGEIIRL EGNYAYIQVY  60
   61 EDTSGLSVGD PVIKTGNALS VELGPGILDN IYDGIQRPLE RIANVCGDVY IYKGIDMTSL 120
  121 DHDKQWQFYA DKKLKLNDIV TGGDIFGFVD ENKLFKEHKI MAPPNAKGRL TYIAPDGSYT 180
  181 LKDKIFELEY QGKKYTYGLS HLWPVRDPRP VLEKVTGDTL LLTGQRVLDS LFPTVQGGTC 240
  241 AIPGAFGCGK TCVSQALSKY SNSEVIIYVG CGERGNEMAE ILSDFPELTT KVDNEDVGIM 300
  301 QRTCLVANTS NMPVAAREAS IYTGITLCEY FRDMGYNATM MADSTSRWAE ALREISGRLA 360
  361 EMPADSGYPA YLGARLASFY ERAGKVKCIG SPSRIGSITI VGAVSPPGGD FSDPVTTATM 420
  421 SIVQAFWGLD KKLAQRKHFP SVNWSTSFSK YVRQLEQYFD NFDQDFLSLR QKISDILQQE 480
  481 SDLNDIVQLV GKDSLSEDQK VVMEVAKIIR EDFLQQNAFS DYDYMCPLQK TVGMMRIICH 540
  541 FYAQCLRTLQ EYDSRERKIG WGSIYNTLRP TINKITHMKF ENPKNSDEYF KKYFKALEEE 600
  601 ITVGLRNLME K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	151.0
Match:	1vdzA
Description:	Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits