YRC Public Data Repository - Protein Structure Prediction

Protein:	UVRC_LISMO
Organism:	Listeria monocytogenes
Length:	603 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UVRC_LISMO.

Description	E-value	Query Range	Subject Range
UVRC_LISIN - UvrABC system protein C OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=uvrC PE=3 SV=1 UVRC_LISIN - UvrABC system protein C OS=Listeria innocua GN=uvrC PE=3 SV=1	785.0	[0..1]	[603..1]
UVRC_LISMC - UvrABC system protein C OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=uvrC PE=3 SV=1 gi\|47017496, gi\|... - gi\|47094129\|ref\|ZP_00231851.1\| excinuclease ABC, C subunit [Listeria monocytogenes str. 4b H7858], g... gi\|254823512 - gi\|254823512\|ref\|ZP_05228513.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL J1-194] UVRC_LISMC - UvrABC system protein C OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=uvrC PE=3 SV=1 gi\|254878572 - gi\|254878572\|ref\|ZP_05251282.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL J2-071] gi\|254852897 - gi\|254852897\|ref\|ZP_05242245.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL R2-503] gi\|255521233 - gi\|255521233\|ref\|ZP_05388470.1\| excinuclease ABC subunit C [Listeria monocytogenes FSL J1-175] gi\|254932888 - gi\|254932888\|ref\|ZP_05266247.1\| excinuclease ABC subunit C [Listeria monocytogenes HPB2262]	785.0	[0..1]	[603..1]
UVRC_LISMF - UvrABC system protein C OS=Listeria monocytogenes serotype 4b (strain F2365) GN=uvrC PE=3 SV=1	785.0	[0..1]	[603..1]
gi\|152976918, gi... - gi\|89200347\|ref\|ZP_01179101.1\| Excinuclease ABC, C subunit [Bacillus cereus subsp. cytotoxis NVH 391...	762.0	[0..4]	[595..5]
UVRC_BACHK - UvrABC system protein C OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=uvrC PE=3 SV=1 UVRC_BACCZ - UvrABC system protein C OS=Bacillus cereus (strain ZK / E33L) GN=uvrC PE=3 SV=1 UVRC_BACAH - UvrABC system protein C OS=Bacillus thuringiensis (strain Al Hakam) GN=uvrC PE=3 SV=1 gi\|228935829, gi... - gi\|228935829\|ref\|ZP_04098641.1\| UvrABC system protein C [Bacillus thuringiensis serovar andalousiens... gi\|228830145, gi... - gi\|228929566\|ref\|ZP_04092585.1\| UvrABC system protein C [Bacillus thuringiensis serovar pondicherien... UVRC_BACC3 - UvrABC system protein C OS=Bacillus cereus (strain 03BB102) GN=uvrC PE=3 SV=1 gi\|229186752, gi... - gi\|229186752\|ref\|ZP_04313910.1\| UvrABC system protein C [Bacillus cereus BGSC 6E1], gi\|228596765\|gb\|... gi\|229124083, gi... - gi\|229124083\|ref\|ZP_04253275.1\| UvrABC system protein C [Bacillus cereus 95/8201], gi\|228659385\|gb\|E... gi\|228689824, gi... - gi\|229093615\|ref\|ZP_04224716.1\| UvrABC system protein C [Bacillus cereus Rock3-42], gi\|228689824\|gb\|... gi\|228811600, gi... - gi\|228948242\|ref\|ZP_04110526.1\| UvrABC system protein C [Bacillus thuringiensis serovar monterrey BG... UVRC_BACHK - UvrABC system protein C OS=Bacillus thuringiensis subsp. konkukian GN=uvrC PE=3 SV=1 UVRC_BACC0 - UvrABC system protein C OS=Bacillus cereus (strain AH820) GN=uvrC PE=3 SV=1 gi\|196029973, gi... - gi\|196039346\|ref\|ZP_03106652.1\| excinuclease ABC, C subunit [Bacillus cereus NVH0597-99], gi\|1960299... gi\|196034329, gi... - gi\|196034329\|ref\|ZP_03101738.1\| excinuclease ABC, C subunit [Bacillus cereus W], gi\|195992871\|gb\|EDX...	760.0	[0..4]	[595..3]
gi\|49187411, gi\|... - gi\|49187411\|ref\|YP_030663.1\| excinuclease ABC subunit C [Bacillus anthracis str. Sterne], gi\|4918133... gi\|47505204, gi\|... - gi\|47530056\|ref\|YP_021405.1\| excinuclease ABC subunit C [Bacillus anthracis str. 'Ames Ancestor'], g... gi\|30259244, gi\|... - gi\|30264586\|ref\|NP_846963.1\| excinuclease ABC subunit C [Bacillus anthracis str. Ames], gi\|30259244\|... gi\|167529035, gi... - gi\|167635615\|ref\|ZP_02393927.1\| excinuclease ABC, C subunit [Bacillus anthracis str. A0442], gi\|1675... gi\|21402562, gi\|... - gi\|65321885\|ref\|ZP_00394844.1\| COG0322: Nuclease subunit of the excinuclease complex [Bacillus anthr... gi\|164712782, gi... - gi\|165871485\|ref\|ZP_02216132.1\| excinuclease ABC, C subunit [Bacillus anthracis str. A0488], gi\|1647... gi\|170688237, gi... - gi\|170688237\|ref\|ZP_02879447.1\| excinuclease ABC, C subunit [Bacillus anthracis str. A0465], gi\|1706... gi\|167641662, gi... - gi\|167641662\|ref\|ZP_02399907.1\| excinuclease ABC, C subunit [Bacillus anthracis str. A0193], gi\|1675... gi\|177653110, gi... - gi\|177653110\|ref\|ZP_02935397.1\| excinuclease ABC, C subunit [Bacillus anthracis str. A0174], gi\|1720... gi\|170708324, gi... - gi\|170708324\|ref\|ZP_02898768.1\| excinuclease ABC, C subunit [Bacillus anthracis str. A0389], gi\|1701... UVRC_BACAC - UvrABC system protein C OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=uvrC PE=3 SV=1 UVRC_BACAA - UvrABC system protein C OS=Bacillus anthracis (strain A0248) GN=uvrC PE=3 SV=1 gi\|254686991 - gi\|254686991\|ref\|ZP_05150849.1\| excinuclease ABC subunit C [Bacillus anthracis str. CNEVA-9066] gi\|254724554 - gi\|254724554\|ref\|ZP_05186337.1\| excinuclease ABC subunit C [Bacillus anthracis str. A1055] gi\|254736623 - gi\|254736623\|ref\|ZP_05194329.1\| excinuclease ABC subunit C [Bacillus anthracis str. Western North Am... gi\|254741661 - gi\|254741661\|ref\|ZP_05199348.1\| excinuclease ABC subunit C [Bacillus anthracis str. Kruger B] gi\|254754741 - gi\|254754741\|ref\|ZP_05206776.1\| excinuclease ABC subunit C [Bacillus anthracis str. Vollum] gi\|254757573 - gi\|254757573\|ref\|ZP_05209600.1\| excinuclease ABC subunit C [Bacillus anthracis str. Australia 94] UVRC_BACAN - UvrABC system protein C OS=Bacillus anthracis GN=uvrC PE=3 SV=1 gi\|190561884, gi... - gi\|190566893\|ref\|ZP_03019809.1\| excinuclease ABC, C subunit [Bacillus anthracis Tsiankovskii-I], gi\|...	758.0	[0..4]	[595..3]
UVRC_BACC1 - UvrABC system protein C OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=uvrC PE=3 SV=1	757.0	[0..4]	[595..3]
gi\|229013719, gi... - gi\|229013719\|ref\|ZP_04170848.1\| UvrABC system protein C [Bacillus mycoides DSM 2048], gi\|228747641\|g... UVRC_BACWK - UvrABC system protein C OS=Bacillus weihenstephanensis (strain KBAB4) GN=uvrC PE=3 SV=1	755.0	[0..4]	[595..3]
gi\|228903037, gi... - gi\|228903037\|ref\|ZP_04067176.1\| UvrABC system protein C [Bacillus thuringiensis IBL 4222], gi\|228856... gi\|74489937, gi\|... - gi\|75762575\|ref\|ZP_00742428.1\| Excinuclease ABC subunit C [Bacillus thuringiensis serovar israelensi...	754.0	[0..4]	[595..3]
UVRC_ENTFA - UvrABC system protein C OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=uvrC PE=3 SV=1 gi\|229550103, gi... - gi\|229550103\|ref\|ZP_04438828.1\| excinuclease ABC subunit C [Enterococcus faecalis ATCC 29200], gi\|22... gi\|238829270, gi... - gi\|238858175\|ref\|ZP_04648398.1\| excinuclease ABC subunit C [Enterococcus faecalis TUSoD Ef11], gi\|23... UVRC_ENTFA - UvrABC system protein C OS=Enterococcus faecalis GN=uvrC PE=3 SV=1 gi\|227553202, gi... - gi\|227553202\|ref\|ZP_03983251.1\| excinuclease ABC subunit C [Enterococcus faecalis HH22], gi\|22717767... gi\|229545909, gi... - gi\|229545909\|ref\|ZP_04434634.1\| excinuclease ABC subunit C [Enterococcus faecalis TX1332], gi\|229308... gi\|227073851, gi... - gi\|227518671\|ref\|ZP_03948720.1\| excinuclease ABC subunit C [Enterococcus faecalis TX0104], gi\|227073...	754.0	[0..3]	[598..2]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEHIQNKL ALLPDQPGCY LMKDRQGTII YVGKAKILKN RVRSYFSGTH DSKTQRLVQE  60
   61 IVDFEYIVTS SNVEALLLEI NLIKKHDPRF NIRLKDDKTY PFIKIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1yd6A
Description:	Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [107-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NERHPRLIIT RQVKKDKGKY FGPYPNVYAA NEVKRILDRL YPLRKCSTLP NKVCLYYHLG  60
   61 QCLAPCVFDV EASKYKEMQD EIVAFLNGGY KTVKNDLMKK MQEAAENMEF EKAGEFRDQI 120
  121 NAIETTMEKQ KMTMN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.154902
Match:	2d7dA
Description:	No description for 2d7dA was found.

Predicted Domain #3

Region A:
Residues: [242-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFVDRDVFGY AIDKGWMCVQ VFFIRQGKLI ERDVSQFPFY NDADEDFLTF IGQFYQKANH  60
   61 IPPQEIYLPN DVDSEAVQAV VPDTKIIVPQ RG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.706	0.077	excinuclease ABC activity	d.50.1	dsRNA-binding domain-like
View	Download	0.718	0.026	excinuclease ABC activity	c.84.1	Phosphoglucomutase, first 3 domains
View	Download	0.565	N/A	N/A	c.84.1	Phosphoglucomutase, first 3 domains
View	Download	0.559	N/A	N/A	c.84.1	Phosphoglucomutase, first 3 domains
View	Download	0.555	N/A	N/A	c.84.1	Phosphoglucomutase, first 3 domains

Predicted Domain #4

Region A:
Residues: [334-603]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKKDLVKLAY KNAKIALNEK FMLLERNEER TVGAVERLGE AMGIPTPSRV EAFDNSNIHG  60
   61 TDPVSAMVTF LDGKPSKNDY RKYKIKTVEG PDDYATMREV IRRRYWRVLK EGLPMPDLIL 120
  121 IDGGKGQIDS AKDVLTNELG LDIPVAGLAK DDKHRTSQLL FGDPLEIVPL ERNSQEFYLL 180
  181 QRMQDEVHRF AITFHRQLRS KTGFQSILDG IPGVGPGRKK KLLKHFGSMK KLKEASIEEI 240
  241 KEAGVPLNVA EEVHKHITAF NEKAKNTEQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	2nrtA
Description:	No description for 2nrtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits