YRC Public Data Repository - Protein Structure Prediction

Protein:	UTS2G_CYPCA
Organism:	Cyprinus carpio
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTS2G_CYPCA.

Description	E-value	Query Range	Subject Range
gi\|38343960 - gi\|38343960\|emb\|CAD56908.1\| urotensin II precursor [Platichthys flesus]	184.0	[0..1]	[125..1]
UTS2A_CYPCA - Prepro-urotensin II-alpha OS=Cyprinus carpio PE=1 SV=1	174.0	[0..1]	[125..1]
gi\|118344610, gi... - gi\|89331013\|emb\|CAI63878.1\| urotensin II precursor [Takifugu rubripes], gi\|87116235\|emb\|CAI53670.1\| ...	165.0	[0..1]	[125..1]
gi\|190336811, gi... - gi\|47086341\|ref\|NP_998013.1\| urotensin 2, alpha [Danio rerio], gi\|32140467\|gb\|AAP69834.1\| urotensin ...	164.0	[0..1]	[125..1]
gi\|61859014 - gi\|61859014\|ref\|XP_582447.1\| PREDICTED: similar to urotensin II transcript [Bos taurus]	163.0	[0..4]	[125..2]
UTS2_MOUSE - Urotensin-2 OS=Mus musculus GN=Uts2 PE=2 SV=1	159.0	[0..8]	[125..6]
UTS2_RAT - Urotensin-2 OS=Rattus norvegicus GN=Uts2 PE=2 SV=1	156.0	[0..8]	[125..6]
UTS2_MACMU - Urotensin-2 OS=Macaca mulatta GN=UTS2 PE=2 SV=1	153.0	[0..4]	[125..2]
UTS2_PIG - Urotensin-2 OS=Sus scrofa GN=UTS2 PE=2 SV=1	149.0	[0..20]	[125..18]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMCNLLLSCS VLLLSCSHLL AHPVTDTADM TYSGPDSVEE AGGVNPDDFS VSDLNEHLQR  60
   61 AAVAGYSPLF SQENIKVPGQ IPKEALRELL LEKPYRLIPP RGLWGSRRQF RKRGGGADCF 120
  121 WKYCI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits