YRC Public Data Repository - Protein Structure Prediction

Protein:	UPPS_THETN
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPPS_THETN.

Description	E-value	Query Range	Subject Range
gi\|23128548, gi\|... - gi\|23128548\|ref\|ZP_00110393.1\| COG0020: Undecaprenyl pyrophosphate synthase [Nostoc punctiforme PCC ...	355.0	[0..9]	[247..11]
gi\|167037632, gi... - gi\|76796454\|ref\|ZP_00778816.1\| Di-trans-poly-cis-decaprenylcistransferase [Thermoanaerobacter ethano... gi\|241903183, gi... - gi\|241903183\|ref\|ZP_04787910.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter brockii subsp....	352.0	[0..7]	[247..9]
ISPT1_NOSS1 - Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=uppS1 PE=3 SV=1 gi\|25314096 - pir\|\|AD2180 undecaprenyl pyrophosphate synthetase [imported] - Nostoc sp. (strain PCC 7120)	352.0	[0..7]	[247..9]
gi\|166854533, gi... - gi\|167040293\|ref\|YP_001663278.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X514], gi... gi\|242258359, gi... - gi\|242258359\|ref\|ZP_04803172.1\| undecaprenyl diphosphate synthase [Thermoanaerobacter sp. X513], gi\|...	351.0	[0..7]	[247..9]
ISPT_ANAVT - Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=uppS PE=3 SV=2	350.0	[0..7]	[247..9]
gi\|67922228, gi\|... - gi\|67922228\|ref\|ZP_00515742.1\| Di-trans-poly-cis-decaprenylcistransferase [Crocosphaera watsonii WH ...	348.0	[0..9]	[247..42]
gi\|170714048, gi... - gi\|170714048\|gb\|EDT26230.1\| undecaprenyl diphosphate synthase [Clostridium perfringens CPE str. F496... gi\|110676017, gi... - gi\|110801370\|ref\|YP_696383.1\| undecaprenyl diphosphate synthase [Clostridium perfringens ATCC 13124]... gi\|182380984, gi... - gi\|182380984\|gb\|EDT78463.1\| undecaprenyl diphosphate synthase [Clostridium perfringens NCTC 8239], g... ISPT_CLOPE - Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type A) GN=uppS PE=3 SV=1 gi\|169299227, gi... - gi\|169342721\|ref\|ZP_02863762.1\| undecaprenyl diphosphate synthase [Clostridium perfringens C str. JG... gi\|177907477, gi... - gi\|182627140\|ref\|ZP_02954855.1\| undecaprenyl diphosphate synthase [Clostridium perfringens D str. JG... gi\|110803535, gi... - gi\|110803535\|ref\|YP_698983.1\| undecaprenyl diphosphate synthase [Clostridium perfringens SM101], gi\|... gi\|168208113, gi... - gi\|170660606\|gb\|EDT13289.1\| undecaprenyl diphosphate synthase [Clostridium perfringens E str. JGS198... UPPS_CLOPE - Undecaprenyl pyrophosphate synthase OS=Clostridium perfringens GN=uppS PE=3 SV=1 gi\|170710581, gi... - gi\|170710581\|gb\|EDT22763.1\| undecaprenyl diphosphate synthase [Clostridium perfringens B str. ATCC 3...	348.0	[0..13]	[247..18]
gi\|77405648, gi\|... - gi\|77405648\|ref\|ZP_00782736.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae H36B], gi... gi\|76787788, gi\|... - gi\|76787788\|ref\|YP_330469.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae A909], gi\|7... gi\|77412295, gi\|... - gi\|77412295\|ref\|ZP_00788610.1\| undecaprenyl diphosphate synthase [Streptococcus agalactiae CJB111], ...	346.0	[0..3]	[247..2]
ISPT_SYNY3 - Isoprenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=uppS PE=3 SV=1 UPPS_SYNY3 - Undecaprenyl pyrophosphate synthase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=upp... gi\|7447507 - pir\|\|S75982 hypothetical protein sll0506 - Synechocystis sp. (strain PCC 6803)	345.0	[0..9]	[247..11]
ISPT_THEEB - Isoprenyl transferase OS=Thermosynechococcus elongatus (strain BP-1) GN=uppS PE=3 SV=1 UPPS_SYNEL - Undecaprenyl pyrophosphate synthetase OS=Synechococcus elongatus GN=uppS PE=3 SV=1	344.0	[0..9]	[247..13]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFFNEEKLI KKLDKTRLPQ HVGIIMDGNG RWAQKRGMPR VYGHKAGVNA VREVIRSCRE  60
   61 LGIKYLTLYA FSTENWKRPK EEVDFLMDLL VEYLSKEVDE LNKNNVVVKF IGDISRLPEK 120
  121 CQIEIEKAQK LTEKNTGLVV NIALNYGGRD EIVKATQNIC KKVLNRELSP EDITEDTITQ 180
  181 HLYTASQPDP DLIIRTSGEK RLSNFLLWQS AYSELWFTEV LWPDFKKRHL IEALLYYQTR 240
  241 KRRFGGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.0
Match:	1jp3A
Description:	Undecaprenyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
prenyltransferase activity	4.40397054534951	bayes_pls_golite062009
di-trans,poly-cis-decaprenylcistransferase activity	3.07573514495519	bayes_pls_golite062009
transferase activity	1.42376896518855	bayes_pls_golite062009
catalytic activity	0.878978773660153	bayes_pls_golite062009
dehydrodolichyl diphosphate synthase activity	0.761527128946352	bayes_pls_golite062009
binding	0.747530931796963	bayes_pls_golite062009
protein binding	0.331797220769091	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	0.256467886977999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: