YRC Public Data Repository - Protein Structure Prediction

Protein:	UCRQ_NEUCR, QCR8...
Organism:	Neurospora crassa
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UCRQ_NEUCR, QCR8....

Description	E-value	Query Range	Subject Range
gi\|46137579, gi\|... - gi\|46137579\|ref\|XP_390481.1\| hypothetical protein FG10305.1 [Gibberella zeae PH-1], gi\|42547160\|gb\|E...	154.0	[0..1]	[107..1]
gi\|240108911 - gi\|240108911\|gb\|EER27080.1\| Ubiquinol-cytochrome C reductase complex ubiquinone-binding proteinQP-C ... gi\|119181209, gi... - gi\|90300632\|gb\|EAS30263.1\| hypothetical protein CIMG_05742 [Coccidioides immitis RS], gi\|119181209\|r...	143.0	[0..11]	[107..2]
gi\|38106585, gi\|... - gi\|39976141\|ref\|XP_369461.1\| hypothetical protein MGG_06003 [Magnaporthe grisea 70-15], gb\|EAA52875....	141.0	[0..1]	[106..1]
qcr8 - ubiquinol-cytochrome-c reductase complex subunit 7 QCR8_SCHPO - Cytochrome b-c1 complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr8 PE=...	133.0	[0..11]	[103..1]
gi\|50259182, gi\|... - gi\|50259182\|gb\|EAL21857.1\| hypothetical protein CNBC4300 [Cryptococcus neoformans var. neoformans B-...	133.0	[0..1]	[106..1]
gi\|66850353, gi\|... - gi\|70995926\|ref\|XP_752718.1\| ubiquinol-cytochrome C reductase complex subunit UcrQ [Aspergillus fumi... gi\|159131473 - gi\|159131473\|gb\|EDP56586.1\| ubiquinol-cytochrome C reductase complex subunit UcrQ, putative [Aspergi...	126.0	[0..29]	[106..7]
ORFP:11940 - YJL166W, Contig c343 91796-92080 reverse complement QCR8_YEAST - Cytochrome b-c1 complex subunit 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QCR8 P... gi\|190409345 - gi\|190409345\|gb\|EDV12610.1\| ubiquinol cytochrome C reductase subunit 8 [Saccharomyces cerevisiae RM1... gi\|151944963 - gi\|151944963\|gb\|EDN63218.1\| ubiquinol-cytochrome c oxidoreductase complex subunit [Saccharomyces cer... QCR8 - Subunit 8 of ubiquinol cytochrome-c reductase complex, which is a component of the mitochondrial inn...	126.0	[0..13]	[103..2]
gi\|45190486, gi\|... - gi\|45190486\|ref\|NP_984740.1\| AEL121Wp [Ashbya gossypii ATCC 10895], gi\|44983428\|gb\|AAS52564.1\| AEL12... gi\|44983428 - gi\|44983428\|gb\|AAS52564.1\| AEL121Wp [Ashbya gossypii ATCC 10895]	125.0	[0..13]	[103..2]
gi\|49650745 - gi\|49650745\|emb\|CAG77677.1\| YALI0F01771p [Yarrowia lipolytica] gi\|49650745, gi\|... - gi\|50554933\|ref\|XP_504875.1\| YALI0F01771p [Yarrowia lipolytica], gi\|49650745\|emb\|CAG77677.1\| unnamed...	125.0	[0..16]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPTQTMLGG GGGAPIGKHN HYLGGWGNFG GMKQRGIISY GISPNRQNPL AGTAHDAVFN  60
   61 TFRRVSSQFL YWAPSLVAGY YIMNWAIERN HYLNSKAGRA EFAGQEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2ibzG
Description:	No description for 2ibzG was found.

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	11.4657297014599	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	11.4657297014599	bayes_pls_golite062009
ubiquinone binding	8.14330726546719	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.07004376323578	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.53710572481351	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.38577566963514	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.79259194111116	bayes_pls_golite062009
oxidoreductase activity	4.78909275746755	bayes_pls_golite062009
cation transmembrane transporter activity	4.5536689474984	bayes_pls_golite062009
ion transmembrane transporter activity	4.36122531415799	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.96296151827022	bayes_pls_golite062009
substrate-specific transporter activity	3.77517262558965	bayes_pls_golite062009
quinone binding	2.82234066289866	bayes_pls_golite062009
binding	1.40610802203062	bayes_pls_golite062009
cofactor binding	0.937113949001792	bayes_pls_golite062009
catalytic activity	0.442357802307605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: