YRC Public Data Repository - Protein Structure Prediction

Protein:	QCR7_CYBJA
Organism:	Cyberlindnera jadinii
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for QCR7_CYBJA.

Description	E-value	Query Range	Subject Range
UCR7_KLULA, QCR7... - Ubiquinol-cytochrome c reductase complex 14 kDa protein - Kluyveromyces lactis (Yeast) (Candida spha... QCR7_KLULA - Cytochrome b-c1 complex subunit 7 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /...	178.0	[0..3]	[126..4]
gi\|3601 - gi\|3601\|emb\|CAA25064.1\| unnamed protein product [Saccharomyces cerevisiae]	175.0	[0..3]	[126..4]
UCR7_DEBHA, QCR7... - Ubiquinol-cytochrome c reductase complex 14 kDa protein - Debaryomyces hansenii (Yeast) (Torulaspora... QCR7_DEBHA - Cytochrome b-c1 complex subunit 7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 /...	175.0	[0..1]	[124..1]
gi\|169604618, gi... - gi\|169604618\|ref\|XP_001795730.1\| hypothetical protein SNOG_05323 [Phaeosphaeria nodorum SN15], gi\|11...	173.0	[0..6]	[126..2]
gi\|115398275, gi... - gi\|115398275\|ref\|XP_001214729.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	169.0	[0..6]	[126..2]
QCR7_ASHGO, UCR7... - Ubiquinol-cytochrome c reductase complex 14 kDa protein - Ashbya gossypii (Yeast) (Eremothecium goss... QCR7_ASHGO - Cytochrome b-c1 complex subunit 7 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / N...	167.0	[0..3]	[125..4]
QCR7_YARLI - Cytochrome b-c1 complex subunit 7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=QCR7 PE=3 SV=1 QCR7_YARLI, UCR7... - Ubiquinol-cytochrome c reductase complex 14 kDa protein - Yarrowia lipolytica (Candida lipolytica), ...	165.0	[0..1]	[126..1]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHTSIVKA GDFILRTPVL RSIFVPAAKL FCAYSGYRQL GLKFDDLIHE ENPTVQKALS  60
   61 RLPKDEIYAR NFRMLTAAQC GITHHLLSAD KALKPSEDTP YLLPYLLELE AEAAERVELD 120
  121 NVEVAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1kyoG
Description:	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	11.5736971809848	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	11.5736971809848	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.17739656377432	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.63908133042525	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.48702641896397	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.88973324048899	bayes_pls_golite062009
oxidoreductase activity	4.83598965448391	bayes_pls_golite062009
cation transmembrane transporter activity	4.64530477348772	bayes_pls_golite062009
ion transmembrane transporter activity	4.44988249046834	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.04580005556932	bayes_pls_golite062009
substrate-specific transporter activity	3.85284374888084	bayes_pls_golite062009
binding	1.33677693666883	bayes_pls_golite062009
protein binding	0.634460610267232	bayes_pls_golite062009
catalytic activity	0.385153095337306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: