YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIH_ECOLI
Organism:	Escherichia coli
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|114769835 - gi\|114769835\|ref\|ZP_01447445.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family prot... gi\|114769835, gi... - gi\|114769835\|ref\|ZP_01447445.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family prot...	289.0	[0..2]	[391..6]
gi\|45506407, gi\|... - gi\|75907449\|ref\|YP_321745.1\| 2-octaprenyl-6-methoxyphenyl hydroxylase [Anabaena variabilis ATCC 2941...	282.0	[0..2]	[392..25]
gi\|17133409, gi\|... - gi\|17231766\|ref\|NP_488314.1\| 2-octaprenyl-6-methoxyphenyl hydroxylase [Nostoc sp. PCC 7120], gi\|1713... gi\|25285745 - pir\|\|AC2340 hypothetical protein ubiH [imported] - Nostoc sp. (strain PCC 7120)	281.0	[0..2]	[392..25]
gi\|99079898, gi\|... - gi\|99079898\|ref\|YP_612052.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octapre...	277.0	[0..2]	[391..6]
gi\|86146371, gi\|... - gi\|86146371\|ref\|ZP_01064695.1\| hypothetical protein MED222_22361 [Vibrio sp. MED222], gi\|85835850\|gb...	276.0	[0..1]	[391..5]
gi\|90581599, gi\|... - gi\|90581599\|ref\|ZP_01237390.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio a...	276.0	[0..2]	[389..5]
gi\|84390090, gi\|... - gi\|84390090\|ref\|ZP_00991352.1\| hypothetical protein V12B01_07895 [Vibrio splendidus 12B01], gi\|84376...	276.0	[0..1]	[391..5]
gi\|54310001, gi\|... - gi\|54310001\|ref\|YP_131021.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Photobacte...	276.0	[0..2]	[388..39]
gi\|76884353, gi\|... - gi\|77166039\|ref\|YP_344564.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 [Nitrosococcus... gi\|207088083 - gi\|207088083\|gb\|EDZ65356.1\| hypothetical protein NOC27_2034 [Nitrosococcus oceani AFC27] gi\|254436393, gi... - gi\|254436393\|ref\|ZP_05049899.1\| hypothetical protein NOC27_2034 [Nitrosococcus oceani AFC27], gi\|224...	275.0	[0..2]	[391..9]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIIVGGGM AGATLALAIS RLSHGALPVH LIEATAPESH AHPGFDGRAI ALAAGTCQQL  60
   61 ARIGVWQSLA DCATAITTVH VSDRGHAGFV TLAAEDYQLA ALGQVVELHN VGQRLFALLR 120
  121 KAPGVTLHCP DRVANVARTQ SHVEVTLESG ETLTGRVLVA ADGTHSALAT ACGVDWQQEP 180
  181 YEQLAVIANV ATSVAHEGRA FERFTQHGPL AMLPMSDGRC SLVWCHPLER REEVLSWSDE 240
  241 KFCRELQSAF GWRLGKITHA GKRSAYPLAL THAARSITHR TVLVGNAAQT LHPIAGQGFN 300
  301 LGMRDVMSLA ETLTQAQERG EDMGDYGVLC RYQQRRQSDR EATIGVTDSL VHLFANRWAP 360
  361 LVVGRNIGLM TMELFTPARD VLAQRTLGWV AR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	2qa1A
Description:	No description for 2qa1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits