YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIF_ECOLI
Organism:	Escherichia coli
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90581599, gi\|... - gi\|90581599\|ref\|ZP_01237390.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio a...	269.0	[0..4]	[391..2]
gi\|54310001, gi\|... - gi\|54310001\|ref\|YP_131021.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Photobacte...	269.0	[0..4]	[391..36]
gi\|89049197, gi\|... - gi\|89074958\|ref\|ZP_01161403.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Photobac...	268.0	[0..4]	[391..2]
gi\|160862065, gi... - gi\|160876543\|ref\|YP_001555859.1\| UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase [She...	267.0	[0..5]	[391..32]
gi\|33152863, gi\|... - gi\|33152863\|ref\|NP_874216.1\| putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [H...	266.0	[0..2]	[391..12]
gi\|45506407, gi\|... - gi\|75907449\|ref\|YP_321745.1\| 2-octaprenyl-6-methoxyphenyl hydroxylase [Anabaena variabilis ATCC 2941...	266.0	[0..5]	[391..23]
gi\|17133409, gi\|... - gi\|17231766\|ref\|NP_488314.1\| 2-octaprenyl-6-methoxyphenyl hydroxylase [Nostoc sp. PCC 7120], gi\|1713... gi\|25285745 - pir\|\|AC2340 hypothetical protein ubiH [imported] - Nostoc sp. (strain PCC 7120)	265.0	[0..5]	[391..23]
gi\|117919459, gi... - gi\|78688121\|ref\|ZP_00852842.1\| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 [Shewanella ...	264.0	[0..6]	[391..21]
gi\|24372766, gi\|... - gi\|24372766\|ref\|NP_716808.1\| oxidoreductase, FAD-binding [Shewanella oneidensis MR-1], gi\|24346844\|g... SO1183 - oxidoreductase FAD-binding	264.0	[0..3]	[391..14]
gi\|113888019, gi... - gi\|78691821\|ref\|ZP_00856414.1\| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 [Shewanella ...	264.0	[0..6]	[391..21]

Back

Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNQPTEIAI VGGGMVGGAL ALGLAQHGFA VTVIEHAEPA PFVADSQPDV RISAISAASV  60
   61 SLLKGLGVWD AVQAMRCHPY RRLETWEWET AHVVFDAAEL KLPLLGYMVE NTVLQQALWQ 120
  121 ALEAHPKVTL RVPGSLIALH RHDDLQELEL KGGEVIRAKL VIGADGANSQ VRQMAGIGVH 180
  181 AWQYAQSCML ISVQCENDPG DSTWQQFTPD GPRAFLPLFD NWASLVWYDS PARIRQLQNM 240
  241 NMAQLQAEIA KHFPSRLGYV TPLAAGAFPL TRRHALQYVQ PGLALVGDAA HTIHPLAGQG 300
  301 VNLGYRDVDA LIDVLVNARS YGEAWASYPV LKRYQMRRMA DNFIMQSGMD LFYAGFSNNL 360
  361 PPLRFMRNLG LMAAERAGVL KRQALKYALG L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.522879
Match:	1ykjA
Description:	A45G p-hydroxybenzoate hydroxylase with p-hydroxybenzoate bound
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits