YRC Public Data Repository - Protein Structure Prediction

Protein:	UBC4_SOLLC
Organism:	Solanum lycopersicum
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBC4_SOLLC.

Description	E-value	Query Range	Subject Range
UBC28_ARATH - Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1	214.0	[0..1]	[148..1]
gi\|456568 - gi\|456568\|gb\|AAA64427.1\| ubiquitin conjugating enzyme	213.0	[0..1]	[148..1]
gi\|125550147, gi... - gi\|90399233\|emb\|CAH68307.1\| B0811B10.8 [Oryza sativa (indica cultivar-group)], gi\|125550147\|gb\|EAY95... gi\|195617724, gi... - gi\|238012450\|gb\|ACR37260.1\| unknown [Zea mays], gi\|226492411\|ref\|NP_001148222.1\| ubiquitin-conjugati... gi\|241939908, gi... - gi\|242077578\|ref\|XP_002448725.1\| hypothetical protein SORBIDRAFT_06g032120 [Sorghum bicolor], gi\|241... gi\|32488376, gi\|... - gi\|50929483\|ref\|XP_474269.1\| OSJNBa0043A12.6 [Oryza sativa (japonica cultivar-group)], gi\|32488376\|e...	213.0	[0..1]	[148..1]
gi\|115187616 - gi\|115187616\|gb\|ABI84263.1\| ubiquitin carrier-like protein [Arachis hypogaea]	213.0	[0..1]	[148..1]
gi\|357166623\|ref... - PREDICTED: ubiquitin-conjugating enzyme E2 28-like [Brachypodium distachyon] gi\|52548244 - gi\|52548244\|gb\|AAU82109.1\| ubiquitin-conjugating enzyme [Triticum aestivum]	213.0	[0..1]	[148..1]
gi\|28569271 - gi\|28569271\|gb\|AAL99225.1\| ubiquitin-conjugating enzyme E2 [Gossypium raimondii] gi\|28569269 - gi\|28569269\|gb\|AAL99224.1\| ubiquitin-conjugating enzyme E2 [Gossypium thurberi]	212.0	[0..1]	[148..1]
gi\|37590333, gi\|... - gi\|41152425\|ref\|NP_955958.1\| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) [Danio rerio...	211.0	[0..1]	[147..1]
gi\|109066782 - gi\|109066782\|ref\|XP_001096263.1\| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 4 (putative)... gi\|114613001, gi... - gi\|114613001\|ref\|XP_519070.2\| PREDICTED: ubiquitin-conjugating enzyme E2D 4 (putative) isoform 4 [Pa... UBE2D4 - ubiquitin-conjugating enzyme E2D 4 (putative)	211.0	[0..1]	[147..1]
gi\|22597164 - gi\|22597164\|gb\|AAN03469.1\| ubiquitin-conjugation enzyme [Glycine max]	211.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP TDSPYAGGVF LVSIHFPPDY  60
   61 PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV 120
  121 PEIAHMYKTD RAKYETTARS WTQKYAMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.154902
Match:	1z2uA
Description:	The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits