YRC Public Data Repository - Protein Structure Prediction

Protein:	UB2V2_RAT
Organism:	Rattus norvegicus
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UB2V2_RAT.

Description	E-value	Query Range	Subject Range
gi\|116055009 - gi\|116055009\|emb\|CAL57086.1\| adenine-DNA glycosylase-related / MYH-related (ISS) [Ostreococcus tauri...	151.0	[0..4]	[141..79]
gi\|456568 - gi\|456568\|gb\|AAA64427.1\| ubiquitin conjugating enzyme	148.0	[0..10]	[144..1]
gi\|28569271 - gi\|28569271\|gb\|AAL99225.1\| ubiquitin-conjugating enzyme E2 [Gossypium raimondii] gi\|28569269 - gi\|28569269\|gb\|AAL99224.1\| ubiquitin-conjugating enzyme E2 [Gossypium thurberi]	147.0	[0..10]	[144..1]
gi\|5762457 - gi\|5762457\|gb\|AAD51109.1\|AF176040_1 ubiquitin-conjugating enzyme UBC2 [Mesembryanthemum crystallinum...	146.0	[0..10]	[144..1]
gi\|50759096 - gi\|50759096\|ref\|XP_417514.1\| PREDICTED: similar to dJ1185N5.1.2 (ubiquitin-conjugating enzyme E2 var...	146.0	[0..1]	[145..157]
gi\|28569267 - gi\|28569267\|gb\|AAL99223.1\| ubiquitin-conjugating enzyme E2 [Gossypium arboreum]	146.0	[0..10]	[144..1]
gi\|92872635 - gi\|92872635\|gb\|ABE81234.1\| Ubiquitin-conjugating enzyme, E2 [Medicago truncatula]	146.0	[0..10]	[144..1]
gi\|63079015 - gi\|63079015\|gb\|AAY29571.1\| immature spike ubiquitin-conjugating enzyme 2 [Triticum aestivum]	146.0	[0..10]	[144..1]
UBC4_SOLLC - Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1 gi\|83283973 - gi\|83283973\|gb\|ABC01894.1\| ubiquitin-conjugating enzyme E2-like protein [Solanum tuberosum]	146.0	[0..10]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSTGVKVP RNFRLLEELE EGQKGVGDGT VSWGLEDDED MTLTRWTGMI IGPPRTNYEN  60
   61 RIYSLKVECG SKYPEAPPSV RFVTKINMNG INNSSGMVDA RSIPVLAKWQ NSYSIKVVLQ 120
  121 ELRRLMMSKE NMKLPQPPEG QTYNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	2a4dA
Description:	Structure of the human ubiquitin-conjugating enzyme E2 variant 1 (UEV-1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits