YRC Public Data Repository - Protein Structure Prediction

Protein:	SF3BB_ARATH
Organism:	Arabidopsis thaliana
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SF3BB_ARATH.

Description	E-value	Query Range	Subject Range
gi\|76780360 - gi\|76780360\|gb\|AAI06479.1\| MGC131202 protein [Xenopus laevis] gi\|62858321, gi\|... - gi\|62858321\|ref\|NP_001016441.1\| splicing factor 3b, subunit 5, 10kDa [Xenopus (Silurana) tropicalis]...	168.0	[0..4]	[87..2]
gi\|49904601, gi\|... - gi\|50540016\|ref\|NP_001002478.1\| splicing factor 3b, subunit 5 [Danio rerio], gi\|49904601\|gb\|AAH76334...	168.0	[0..4]	[87..2]
ENSCJAT00000043249 - null HGNC:21083\|Ensem... - factor 3b, subunit 5, 10kDa, factor 3b, subunit 5, 10kDa tr\|G1SVT3\|G1SVT3... - pep:novel chromosome:oryCun2:12:134817252:134817509:-1 gene:ENSOCUG00000008752 transcript:ENSOCUT000... tr\|M3VVN9\|M3VVN9... - Splicing factor 3b subunit 5 OS=Felis catus GN=SF3B5 PE=4 SV=1 CCDS5204.1_1 - null gi\|109072487 - gi\|109072487\|ref\|XP_001087950.1\| PREDICTED: similar to SF3b10 [Macaca mulatta] gi\|149744119 - gi\|149744119\|ref\|XP_001502492.1\| PREDICTED: similar to SF3b10 [Equus caballus] gi\|126310653, gi... - gi\|126310653\|ref\|XP_001370624.1\| PREDICTED: similar to Splicing factor 3b, subunit 5, 10kDa [Monodel... gi\|114609648, gi... - gi\|114609648\|ref\|XP_001172714.1\| PREDICTED: SF3b10 isoform 2 [Pan troglodytes], gi\|114609646\|ref\|XP_... gi\|73946096 - gi\|73946096\|ref\|XP_854535.1\| PREDICTED: similar to SF3b10 [Canis familiaris] gi\|60655303, gi\|... - gi\|60655303\|gb\|AAX32215.1\| splicing factor 3b subunit 5 [synthetic construct], gi\|117644966\|emb\|CAL3... SF3B5 - splicing factor 3b, subunit 5, 10kDa SF3B5_BOVIN - Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1	166.0	[0..4]	[87..2]
SF3BA_ARATH - Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=3 SV=1	166.0	[0..1]	[87..1]
gi\|42407437, gi\|... - gi\|50946241\|ref\|XP_482648.1\| splicing factor 3B subunit 5-like protein [Oryza sativa (japonica culti...	165.0	[0..1]	[87..1]
gi\|68051667 - gi\|68051667\|gb\|AAY85097.1\| IP03424p [Drosophila melanogaster]	164.0	[0..5]	[87..8]
gi\|108877467, gi... - gi\|157114059\|ref\|XP_001657963.1\| hypothetical protein AaeL_AAEL006688 [Aedes aegypti], gi\|108877467\|...	163.0	[0..5]	[87..3]
gi\|110755305 - gi\|110755305\|ref\|XP_001120310.1\| PREDICTED: similar to Probable splicing factor 3B subunit 5 (SF3b5)...	163.0	[0..5]	[87..3]
gi\|116117165, gi... - gi\|118792994\|ref\|XP_320622.3\| ENSANGP00000021330 [Anopheles gambiae str. PEST], gi\|116117165\|gb\|EAA0...	163.0	[0..5]	[87..7]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQASDRFNIN SQLEHLQAKY VGTGHADLSR FEWAVNIQRD SYASYIGHYP MLSYFAIAEN  60
   61 ESIGRERYNF MQKMLLPCGL PPEREEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.920819
Match:	PF07189.2
Description:	No description for PF07189.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.700	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.700	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.622	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.622	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.548	N/A	N/A	a.39.1	EF-hand
View	Download	0.548	N/A	N/A	a.39.1	EF-hand
View	Download	0.471	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.468	N/A	N/A	a.159.2	FF domain
View	Download	0.455	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.392	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.382	N/A	N/A	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.279	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.256	N/A	N/A	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.250	N/A	N/A	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits