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View Structure Prediction Details

Protein: TTHY_ERIEU
Organism: Erinaceus europaeus
Length: 145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TTHY_ERIEU.

Description E-value Query
Range		 Subject
Range
TTHY_RAT - Transthyretin OS=Rattus norvegicus GN=Ttr PE=1 SV=1
 207.0 [0..1] [144..1]
TTHY_MOUSE - Transthyretin OS=Mus musculus GN=Ttr PE=1 SV=1
 203.0 [0..1] [144..1]
TTHY_CROPO - Transthyretin OS=Crocodylus porosus GN=TTR PE=1 SV=1
 203.0 [0..1] [145..1]
TTHY_BOVIN - Transthyretin OS=Bos taurus GN=TTR PE=1 SV=1
 201.0 [0..1] [144..1]
TTHY_CHICK - Transthyretin OS=Gallus gallus GN=TTR PE=1 SV=1
 201.0 [0..1] [145..1]
TTHY_TILRU - Transthyretin OS=Tiliqua rugosa GN=TTR PE=1 SV=1
 200.0 [0..1] [145..1]
gi|84795344 - gi|84795344|gb|ABC65926.1| transthyretin precursor [Anas platyrhynchos]
 197.0 [0..1] [145..1]
TTHY_PETBR - Transthyretin OS=Petaurus breviceps GN=TTR PE=1 SV=1
 189.0 [0..1] [145..1]

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Predicted Domain #1
Region A:
Residues: [1-145] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHRLFLLC LAGLVFMSEA GPTGQSKCPL MVKVLDAVRG SPAVNVAVKV FKKAADETWE  60
   61 PFASGKTSES GELHGLTTDE KFVEGVYKVE LDTKSYWKTL GISPFHEYVE VVFTANDSGQ 120
  121 RRYTIAALLS PYSYSTTALV SDPKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.69897
Match: 1ie4A
Description: Transthyretin (prealbumin)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle