YRC Public Data Repository - Protein Structure Prediction

Protein:	TTDT_ECOLI
Organism:	Escherichia coli
Length:	487 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TTDT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	283.0	[0..4]	[487..919]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	266.0	[0..2]	[446..484]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	266.0	[0..4]	[486..471]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	261.0	[0..3]	[479..585]
gi\|66847808, gi\|... - gi\|70990654\|ref\|XP_750176.1\| plasma membrane phosphate transporter Pho87 [Aspergillus fumigatus Af29...	258.0	[0..4]	[487..601]
gi\|49076898, gi\|... - gi\|71021351\|ref\|XP_760906.1\| hypothetical protein UM04759.1 [Ustilago maydis 521], ref\|XP_402374.1\| ...	252.0	[0..3]	[485..546]
gi\|85078865 - gi\|85078865\|ref\|XP_956243.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917298, gi\|... - gi\|32414999\|ref\|XP_327979.1\| hypothetical protein [Neurospora crassa], gi\|28917298\|gb\|EAA27007.1\| hy...	252.0	[0..4]	[487..539]
gi\|116199663, gi... - gi\|88179266\|gb\|EAQ86734.1\| hypothetical protein CHGG_07987 [Chaetomium globosum CBS 148.51], gi\|1161...	249.0	[0..11]	[487..506]
gi\|169771137 - gi\|169771137\|ref\|XP_001820038.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767897 - gi\|83767897\|dbj\|BAE58036.1\| unnamed protein product [Aspergillus oryzae]	241.0	[0..4]	[487..394]
gi\|40747412, gi\|... - gi\|67516375\|ref\|XP_658073.1\| hypothetical protein AN0469.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	240.0	[0..31]	[487..672]

Back

Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSTEWWRY LAPLAVIAII ALLPVPAGLE NHTWLYFAVF TGVIVGLILE PVPGAVVAMV  60
   61 GISIIAILSP WLLFSPEQLA QPGFKFTAKS LSWAVSGFSN SVIWLIFAAF MFGTGYEKTG 120
  121 LGRRIALILV KKMGHRTLFL GYAVMFSELI LAPVTPSNSA RGAGIIYPII RNLPPLYQSQ 180
  181 PN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSSRSIGSY IMWMGIVADC VTSAIFLTAM APNLLLIGLM KSASHATLSW GDWFLGMLPL  60
   61 SILLVLLVPW LAYVLYPPVL KSGDQVPRWA ETELQAMGPL CSREKRMLGL MVGALVLWIF 120
  121 GGDYIDAAMV GYSVVALMLL LRIISWDDIV SNKAAWNVFF WLASLITLAT GLNNTGFISW 180
  181 FGKLLAGSLS GY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [375-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTMVMVALI VVFYLLRYFF ASATAYTSAL APMMIAAALA MPEIPLPVFC LMVGAAIGLG  60
   61 SILTPYATGP SPIYYGSGYL PTADYWRLGA IFGLIFLVLL VITGLLWMPV VLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits