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View Structure Prediction Details

Protein: unc-103
Organism: Caenorhabditis elegans
Length: 666 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for unc-103.

Predicted Domain #1
Region A:
Residues: [1-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTNHTGI IQHHPSQSQQ QATTSSGAGN AVASQAKQLM VVLQSGSYKV LSLGADVLPE  60
   61 YKLQPTRIHH CTIVHYSPFK AVWDWIILLL VIYTAVFTPY VAAFLLRELQ DTAKKSRFTE 120
  121 PLEIVDLIVD IMFIVDIIIN FRTTYVNEND EACQVVSDPG KIATHYFKGW FIIDMVAAVP 180
  181 FDLLLVSTNS DETTTLIGLL KTARLLRLVR VARKLDRYSE YGAAVLLLLM ATFALIAHWL 240
  241 ACIWYAIGSA ELSHKEYTWL HQLSKQLAQP YTSTNGTIPT GGPTLKSRYV TSLYFTLSTI 300
  301 TSIGFGNVSA TTDSEKIFTI IMMILGSLMY ASVFGNVSAI IQRLYSGTAR YHTEMSRLRE 360
  361 FIRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.09691
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [365-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HQIPNPLRQR LEEYFQHAWS YTNGIDMNLV LKGFPDCLQA DICLHLNRNL LSGCAAFAGS  60
   61 TPGCLRALSM RFRTTHSPPG DTLVHRGDIL TGLYFIARGS VEILNDDNTV MGILGKDDIF 120
  121 GENPLLYDEV GKSSCNVRAL TYCDLHKILR DDLLDVLDMY PEFAETFCKN LTITYNLRDD 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 1q3eA
Description: HCN2J 443-645 in the presence of cGMP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [545-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQSLRKKFDR HKLLRMSSSM NKDRYTTPPD GDHGNAAVRR SAESVSRCDS NPIDRRQSAG  60
   61 SRNRSDDYEE RRANMFGRRL ESIESQMERM QNKFNSDMET LIKLVKEQSI IRNNGSSNEG 120
  121 RR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle