YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPG_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPG_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|77385339, gi\|... - gi\|77461336\|ref\|YP_350843.1\| anthranilate synthase component II [Pseudomonas fluorescens Pf0-1], gi\|...	8.0E-59	[1..197]	[1..197]
gi\|86165170, gi\|... - gi\|87119694\|ref\|ZP_01075591.1\| glutamine amidotransferase of anthranilate synthase orpara-aminobenzo...	1.0E-58	[1..191]	[1..191]
gi\|49082724 - gi\|49082724\|gb\|AAT50762.1\| PA0649 [synthetic construct]	2.0E-58	[1..201]	[1..201]
gi\|151233, gi\|94825 - pir\|\|A35114 trpG protein - Pseudomonas aeruginosa, gi\|151233\|gb\|AAA25823.1\| trpG protein [Pseudomon...	2.0E-58	[1..201]	[1..201]
gi\|254243726, gi... - gi\|84324142\|ref\|ZP_00972206.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Pseu... gi\|107099615 - gi\|107099615\|ref\|ZP_01363533.1\| hypothetical protein PaerPA_01000631 [Pseudomonas aeruginosa PACS2]	2.0E-58	[1..201]	[1..201]
gi\|218889372, gi... - gi\|218889372\|ref\|YP_002438236.1\| anthranilate synthase component II [Pseudomonas aeruginosa LESB58],... gi\|115589595, gi... - gi\|32043837\|ref\|ZP_00141099.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Pseu... gi\|84318832, gi\|... - gi\|84318832\|ref\|ZP_00967249.1\| COG0512: Anthranilate/para-aminobenzoate synthases component II [Pseu...	2.0E-58	[1..201]	[1..201]
gi\|21241251, gi\|... - gi\|21241251\|ref\|NP_640833.1\| anthranilate synthase component II [Xanthomonas axonopodis pv. citri st...	2.0E-58	[1..190]	[1..190]
gi\|95108707 - gi\|95108707\|emb\|CAK13401.1\| anthranilate synthase component II (Glutamine amido-transferase) [Pseudo... gi\|95108707, gi\|... - gi\|95108707\|emb\|CAK13401.1\| anthranilate synthase component II (Glutamine amido-transferase) [Pseudo...	2.0E-58	[1..197]	[1..197]
gi\|71736225, gi\|... - gi\|71736225\|ref\|YP_272970.1\| anthranilate synthase component II [Pseudomonas syringae pv. phaseolico...	3.0E-58	[1..198]	[1..198]
tr\|I7C3N6\|I7C3N6... - Anthranilate synthase component II OS=Pseudomonas putida (strain DOT-T1E) GN=trpG PE=4 SV=1 gi\|148545705, gi... - gi\|82739489\|ref\|ZP_00902290.1\| Glutamine amidotransferase of anthranilate synthase [Pseudomonas puti...	3.0E-58	[1..197]	[1..197]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLMIDNYDS FTYNLVQYFG ELKAEVKVVR NDELSVEQIE ALAPERIVLS PGPCTPNEAG  60
   61 VSLAVIERFA GKLPLLGVCL GHQSIGQAFG GEVVRARQVM HGKTSPIHHK DLGVFAGLAN 120
  121 PLTVTRYHSL VVKRESLPEC LEVTAWTQHA DGSLDEIMGV RHKTLNVEGV QFHPESILTE 180
  181 QGHELLANFL RQQGGVRGEG N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.30103
Match:	1qdlB
Description:	Anthranilate synthase GAT subunit, TrpG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-amino-4-deoxychorismate synthase activity	4.48164623771604	bayes_pls_golite062009
anthranilate synthase activity	2.51214170411838	bayes_pls_golite062009
ligase activity	1.77692713123297	bayes_pls_golite062009
oxo-acid-lyase activity	1.35896725827905	bayes_pls_golite062009
catalytic activity	1.30391542469987	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.628648036096965	bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity	0.270391651600004	bayes_pls_golite062009
carbon-carbon lyase activity	0.0769356405014503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: