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View Structure Prediction Details

Protein: TRMB_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii
Length: 239 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRMB_PHOLL.

Description E-value Query
Range
Subject
Range
gi|112702911 - gi|112702911|emb|CAL34130.1| hypothetical protein [Enterobacter sakazakii]
182.0 [0..1] [239..33]

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Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINNVISPEF DENGRALRRV RSFVRRQGRL TNRQQQALDN LWPKIGVEYQ AEKLELGALF  60
   61 GREAPVVLEI GFGMGASLVT MASQNPEKDF LGIEVHVPGV GACLASAEDE NIGNLRVMCH 120
  121 DAIEVLENMI PDNRLEMVQL FFPDPWHKVR HNKRRIVQPP FAELIKSKLK VGGVFHMATD 180
  181 WQPYAEHMLE VMNGVDNYLN LSENGDYVPR PSSRPITKFE LRGQRLGHGV WDIMFKRIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1yzhA
Description: Crystal Structure of the Conserved Hypothetical Protein, Methyltransferase from Streptococcus pneumoniae TIGR4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methyltransferase activity 3.57681394097837 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 3.49392219433935 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 3.39429041855776 bayes_pls_golite062009
RNA methyltransferase activity 3.07428840534971 bayes_pls_golite062009
rRNA methyltransferase activity 2.29640050660273 bayes_pls_golite062009
transferase activity 2.22303238506686 bayes_pls_golite062009
tRNA methyltransferase activity 1.95598912777096 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
N-methyltransferase activity 0.548554528454085 bayes_pls_golite062009
rRNA (adenine) methyltransferase activity 0.533090627724779 bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity 0.455449410561251 bayes_pls_golite062009
tRNA (guanine) methyltransferase activity 0.203168546434167 bayes_pls_golite062009
protein methyltransferase activity 0.0313727777808413 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle