YRC Public Data Repository - Protein Structure Prediction

Protein:	TR134_MOUSE
Organism:	Mus musculus
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR134_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114678742 - gi\|114678742\|ref\|XP_001162685.1\| PREDICTED: similar to V1R-like receptor 2 [Pan troglodytes]	220.0	[0..14]	[298..170]
gi\|94379936 - gi\|94379936\|ref\|XP_357797.3\| PREDICTED: similar to vomeronasal 1 receptor, D14 [Mus musculus]	207.0	[0..3]	[281..140]
TA2R7_PAPHA - Taste receptor type 2 member 7 OS=Papio hamadryas GN=TAS2R7 PE=3 SV=1	204.0	[0..1]	[291..1]
TA2R7_MACMU - Taste receptor type 2 member 7 OS=Macaca mulatta GN=TAS2R7 PE=3 SV=1	204.0	[0..1]	[291..1]
gi\|51989041 - gi\|51989041\|gb\|AAU21083.1\| taste receptor T2R7 [Pan paniscus]	203.0	[0..1]	[293..1]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSHSFIFI VIFCMQSLAA LLQNGFMATV LGREWVRSQG LPAGDMIMAC LAASRFCLHG  60
   61 IAVLNNFLAS AMFWTIKNYF SILWDFTNTV NFWFTTWLAI FYCVKISSFS HPIFFWIKWR 120
  121 ISRSVPRLLL GSLIIGGLSA ISSATGNTIA LQMAACENYT IYYKMMAFYL YYFRCHAMLM 180
  181 WVIPFFLFLL SIILLMFSLY RHLEQMRYHR PRTHDYSTQA HIMALKSLAF FLIFYTSYTL 240
  241 LLTVSVAHVI NVHGSWHWAW EVVTYMGISL HSTILILSNT KMRKALKIKF PDLCIPRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits