YRC Public Data Repository - Protein Structure Prediction

Protein:	TKNK_BOVIN
Organism:	Bos taurus
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TKNK_BOVIN.

Description	E-value	Query Range	Subject Range
TAC3 - tachykinin 3 gi\|123982888, gi... - gi\|123997571\|gb\|ABM86387.1\| tachykinin 3 (neuromedin K, neurokinin beta) [synthetic construct], gi\|1...	225.0	[0..1]	[126..1]
gi\|114644192 - gi\|114644192\|ref\|XP_001168338.1\| PREDICTED: tachykinin 3 [Pan troglodytes]	222.0	[0..1]	[126..1]
gi\|55741789 - ref\|NP_001007197.1\| tachykinin 3 [Sus scrofa] TKNK_PIG - Neurokinin-B OS=Sus scrofa GN=TAC3 PE=1 SV=2	220.0	[0..1]	[126..1]
gi\|73968444 - gi\|73968444\|ref\|XP_849031.1\| PREDICTED: similar to tachykinin 2 [Canis familiaris]	217.0	[0..1]	[126..1]
gi\|109097348 - gi\|109097348\|ref\|XP_001115535.1\| PREDICTED: tachykinin 3 (neuromedin K, neurokinin beta) [Macaca mul...	213.0	[0..1]	[126..1]
gi\|2137658, gi\|6... - gi\|6678209\|ref\|NP_033338.1\| tachykinin 2 [Mus musculus], gi\|449860\|prf\|\|1920220B prepro-tachykinin B...	205.0	[0..1]	[120..1]
gi\|24817670 - gi\|24817670\|emb\|CAD45185.1\| preprotachykinin B [Ovis aries]	192.0	[0..8]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSTLLFAVI LALSSARSLG AVCEESQEQV VPGGGHSKKD SNLYQLPPSL LRRLYDSRVV  60
   61 SLDGLLKMLS KASVGPKESP LPQKRDMHDF FVGLMGKRNL QPDTPVDINQ ENIPSFGTFK 120
  121 YPPSVE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.886057
Match:	PF03823.5
Description:	No description for PF03823.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.599	N/A	N/A	a.29.13	Description not found.
View	Download	0.545	N/A	N/A	a.29.13	Description not found.
View	Download	0.408	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.408	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.384	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.384	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.336	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.247	N/A	N/A	a.72.1	Functional domain of the splicing factor Prp18
View	Download	0.220	N/A	N/A	a.61.1	Retroviral matrix proteins
View	Download	0.212	N/A	N/A	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits